1 His_kinase#1
305-376 aa · 72 aa · 14.9% of protein
Raw token
His_kinase:305:9.18e-25:376:72:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC31_RS08160
Phosphotransfer protein
Clostridioides difficile · GCF_032081365
ClassPPTypeHisKaLength483 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_032081365#XC31_RS08160Stable P2CS identifier used across views.
GenomeGCF_032081365Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Selected clusterNo clusterThis gene is not linked to a local CD-HIT cluster.
External referencesMIST4 XC31_RS08160MIST4
Domain signature
Compact overview inferred from the domain field
His_kinase
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage72 / 483 aa (14.9%)Merged over positioned domains only.
Domain description1 His_kinaseSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: His_kinase:305:9.18e-25:376:72:80
- Domain description: 1 His_kinase
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC31_RS08160Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
No cluster membership available for this gene.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081365
AssemblyASM3208136v1 · Scaffoldhaploid
Genome composition4 241 601 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 52 · RR 56CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key