1 HisKA#1
140-203 aa · 64 aa · 17.7% of protein
Raw token
HisKA:140:0.000000000000024:203:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC30_RS10175
Histidine kinase, Classic
Clostridioides difficile · GCF_032081325
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081325#XC30_RS10175Stable P2CS identifier used across views.
GenomeGCF_032081325Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 361 aa (47.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-360 aa · 109 aa · 30.2% of protein
Raw token
HATPase_c:252:1.23e-24:360:110:109- Raw architecture: HisKA:140:0.000000000000024:203:64:64#HATPase_c:252:1.23e-24:360:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081325::NZ_LIER01000050.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37420-39196Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC30_10195RefSeq proteinWP_313136997.1
Context group ID
GCF_032081325::NZ_LIER01000050.1::G00028Context members
XC30_RS10175XC30_RS10180
Partner locus tags
XC30_RS10175XC30_RS10180
Partner old locus tags
XC30_10195XC30_10200
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313136997.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC30_RS10175Primary locus identifier stored in the genes table.
Old locus tagXC30_10195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIER01000050.1Sequence record reported by the local genomic context database.
Genomic interval37 420-38 505 nt1 086 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 420-39 196 ntGCF_032081325::NZ_LIER01000050.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081325::NZ_LIER01000050.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIER01000050.1All displayed genes belong to this local TCS context.
Neighborhood span37 420-39 196 nt1 777 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 420 nt39 196 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC30_RS10175GCF_032081325#XC30_RS10175
HKClassicCurrent focus
37 420-38 505 nt · Reverse (-)
XC30_RS10180GCF_032081325#XC30_RS10180
RROmpR
38 495-39 196 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_032081325#XC30_RS10175The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2744891
Simplified PFAM architecture for HKOC_2744891
PFAM domain coverage: 171 / 361 aa (47.4%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[141-203] | HATPase_c[253-360]
- Domain count: 2
- Matched identifier: HKOC_2744891
- Positioned domains: HisKA 141-203 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_032081325#XC30_RS10175
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081325
AssemblyASM3208132v1 · Scaffoldhaploid
Genome composition4 238 083 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 105 · HK 50 · RR 55CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key