1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:1.42e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC29_RS11840
Response regulator OmpR family
Clostridioides difficile · GCF_032081295
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_032081295#XC29_RS11840Stable P2CS identifier used across views.
GenomeGCF_032081295Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.07e-28:232:78:77- Raw architecture: Response_reg:5:1.42e-36:114:111:111#Trans_reg_C:155:4.07e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_032081295::NZ_LIEQ01000056.1::G00033
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span142410-148134Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC29_11780RefSeq proteinWP_074073749.1
Context group ID
GCF_032081295::NZ_LIEQ01000056.1::G00033Context members
XC29_RS11835XC29_RS11840XC29_RS11845XC29_RS11850XC29_RS11855
Partner locus tags
XC29_RS11835XC29_RS11840XC29_RS11845XC29_RS11850XC29_RS11855
Partner old locus tags
XC29_11775XC29_11780XC29_11785XC29_11790XC29_11795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_074073749.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC29_RS11840Primary locus identifier stored in the genes table.
Old locus tagXC29_11780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEQ01000056.1Sequence record reported by the local genomic context database.
Genomic interval143 561-144 259 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span142 410-148 134 ntGCF_032081295::NZ_LIEQ01000056.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081295::NZ_LIEQ01000056.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEQ01000056.1All displayed genes belong to this local TCS context.
Neighborhood span142 410-148 134 nt5 725 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
142 410 nt148 134 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
XC29_RS11835GCF_032081295#XC29_RS11835
HKClassic
142 410-143 525 nt · Reverse (-)
XC29_RS11840GCF_032081295#XC29_RS11840
RROmpRCurrent focus
143 561-144 259 nt · Reverse (-)
XC29_RS11845GCF_032081295#XC29_RS11845
RROmpR
144 640-145 320 nt · Reverse (-)
XC29_RS11850GCF_032081295#XC29_RS11850
HKClassic
145 370-147 385 nt · Reverse (-)
XC29_RS11855GCF_032081295#XC29_RS11855
RROmpR
147 457-148 134 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001972105#BER38_RS17595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1126081
Simplified PFAM architecture for RROC_1126081
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1126081
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_001972105#BER38_RS17595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081295
AssemblyASM3208129v1 · Scaffoldhaploid
Genome composition4 276 346 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 95 · HK 45 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key