1 HisKA#1
1-65 aa · 65 aa · 28.4% of protein
Raw token
HisKA:1:0.000000000000423:65:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC26_RS05510
Histidine kinase, Classic
Clostridioides difficile · GCF_032081255
ClassHKTypeClassicLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081255#XC26_RS05510Stable P2CS identifier used across views.
GenomeGCF_032081255Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage175 / 229 aa (76.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
110-219 aa · 110 aa · 48.0% of protein
Raw token
HATPase_c:110:2.57e-32:219:110:109- Raw architecture: HisKA:1:0.000000000000423:65:65:64#HATPase_c:110:2.57e-32:219:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081255::NZ_LIEN01000023.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12676-14060Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_032081255::NZ_LIEN01000023.1::G00018Context members
XC26_RS05510XC26_RS05515
Partner locus tags
XC26_RS05510XC26_RS05515
Partner old locus tags
XC26_05535
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_284918265.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC26_RS05510Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_LIEN01000023.1Sequence record reported by the local genomic context database.
Genomic interval12 676-13 365 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span12 676-14 060 ntGCF_032081255::NZ_LIEN01000023.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081255::NZ_LIEN01000023.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEN01000023.1All displayed genes belong to this local TCS context.
Neighborhood span12 676-14 060 nt1 385 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 676 nt14 060 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC26_RS05510GCF_032081255#XC26_RS05510
HKClassicCurrent focus
12 676-13 365 nt · Forward (+)
XC26_RS05515GCF_032081255#XC26_RS05515
RROmpR
13 356-14 060 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030250955#QQO47_RS13980Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2926426
Simplified PFAM architecture for HKOC_2926426
PFAM domain coverage: 175 / 229 aa (76.4%)
1 aa229 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[1-65] | HATPase_c[110-219]
- Domain count: 2
- Matched identifier: HKOC_2926426
- Positioned domains: HisKA 1-65 ; HATPase_c 110-219
Cluster members and taxonomy
Representative gene: GCF_030250955#QQO47_RS13980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081255
AssemblyASM3208125v1 · Scaffoldhaploid
Genome composition4 239 605 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 106 · HK 50 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key