1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.42e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC25_RS17560
Response regulator OmpR family
Clostridioides difficile · GCF_032081225
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081225#XC25_RS17560Stable P2CS identifier used across views.
GenomeGCF_032081225Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:5.52e-32:227:77:77- Raw architecture: Response_reg:4:3.42e-28:113:111:111#Trans_reg_C:151:5.52e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081225::NZ_LIEM01000135.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span547239-549250Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC25_17610RefSeq proteinWP_009890737.1
Context group ID
GCF_032081225::NZ_LIEM01000135.1::G00056Context members
XC25_RS17555XC25_RS17560
Partner locus tags
XC25_RS17555XC25_RS17560
Partner old locus tags
XC25_17605XC25_17610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009890737.1Primary protein accession used for annex mappings.
UniProt accessionA0A069B0L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A069B0L7_CLODIDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC25_RS17560Primary locus identifier stored in the genes table.
Old locus tagXC25_17610Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEM01000135.1Sequence record reported by the local genomic context database.
Genomic interval548 543-549 250 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span547 239-549 250 ntGCF_032081225::NZ_LIEM01000135.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081225::NZ_LIEM01000135.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEM01000135.1All displayed genes belong to this local TCS context.
Neighborhood span547 239-549 250 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
547 239 nt549 250 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC25_RS17555GCF_032081225#XC25_RS17555
HKClassic
547 239-548 549 nt · Reverse (-)
XC25_RS17560GCF_032081225#XC25_RS17560
RROmpRCurrent focus
548 543-549 250 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0212790Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1016365
Simplified PFAM architecture for RROC_1016365
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1016365
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0212790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081225
AssemblyASM3208122v1 · Scaffoldhaploid
Genome composition4 255 382 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 53 · RR 55CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key