1 HisKA#1
2-58 aa · 57 aa · 26.6% of protein
Raw token
HisKA:2:0.000000000121:58:58:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC24_RS05130
Histidine kinase, Classic
Clostridioides difficile · GCF_032081185
ClassHKTypeClassicLength214 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032081185#XC24_RS05130Stable P2CS identifier used across views.
GenomeGCF_032081185Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 214 aa (66.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
105-189 aa · 85 aa · 39.7% of protein
Raw token
HATPase_c:105:7.36e-16:189:88:109- Raw architecture: HisKA:2:0.000000000121:58:58:64#HATPase_c:105:7.36e-16:189:88:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032081185::NZ_LIEL01000065.1::G00013
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span1-646Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC24_05120RefSeq proteinWP_313242211.1
Context group ID
GCF_032081185::NZ_LIEL01000065.1::G00013Context members
XC24_RS05130
Partner locus tags
XC24_RS05130
Partner old locus tags
XC24_05120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313242211.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC24_RS05130Primary locus identifier stored in the genes table.
Old locus tagXC24_05120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEL01000065.1Sequence record reported by the local genomic context database.
Genomic interval1-646 nt646 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1-646 ntGCF_032081185::NZ_LIEL01000065.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081185::NZ_LIEL01000065.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEL01000065.1All displayed genes belong to this local TCS context.
Neighborhood span1-646 nt646 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt646 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
XC24_RS05130GCF_032081185#XC24_RS05130
HKClassicCurrent focus
1-646 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202630Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1783624
Simplified PFAM architecture for HKOC_1783624
PFAM domain coverage: 145 / 464 aa (31.3%)
1 aa464 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[250-308] | HATPase_c[355-440]
- Domain count: 2
- Matched identifier: HKOC_1783624
- Positioned domains: HisKA 250-308 ; HATPase_c 355-440
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081185
AssemblyASM3208118v1 · Scaffoldhaploid
Genome composition4 376 926 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 113 · HK 53 · RR 58CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key