1 His_kinase#1
164-235 aa · 72 aa · 20.0% of protein
Raw token
His_kinase:164:7.13e-25:235:72:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
XC21_RS06120
Histidine kinase, Classic
Clostridioides difficile · GCF_032081145
ClassHKTypeClassicLength360 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_032081145#XC21_RS06120Stable P2CS identifier used across views.
GenomeGCF_032081145Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length360 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 360 aa (48.1%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa360 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
255-355 aa · 101 aa · 28.1% of protein
Raw token
HATPase_c:255:0.00000167:355:107:109- Raw architecture: His_kinase:164:7.13e-25:235:72:80#HATPase_c:255:0.00000167:355:107:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_032081145::NZ_LIEI01000032.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span12644-14540Genomic interval covered by the local TCS group.
Identifiers
Old locus tagXC21_06155RefSeq proteinWP_313241245.1
Context group ID
GCF_032081145::NZ_LIEI01000032.1::G00021Context members
XC21_RS06115XC21_RS06120
Partner locus tags
XC21_RS06115XC21_RS06120
Partner old locus tags
XC21_06150XC21_06155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_313241245.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagXC21_RS06120Primary locus identifier stored in the genes table.
Old locus tagXC21_06155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_LIEI01000032.1Sequence record reported by the local genomic context database.
Genomic interval13 456-14 540 nt1 085 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span12 644-14 540 ntGCF_032081145::NZ_LIEI01000032.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032081145::NZ_LIEI01000032.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_LIEI01000032.1All displayed genes belong to this local TCS context.
Neighborhood span12 644-14 540 nt1 897 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
12 644 nt14 540 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
XC21_RS06115GCF_032081145#XC21_RS06115
RRunclassified
12 644-13 342 nt · Reverse (-)
XC21_RS06120GCF_032081145#XC21_RS06120
HKClassicCurrent focus
13 456-14 540 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0214385Use this link to inspect the representative gene detail.
PFAM architectureCupin_2 + His_kinase2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1468128
Simplified PFAM architecture for HKOC_1468128
PFAM domain coverage: 137 / 501 aa (27.3%)
1 aa501 aa
Cupin_2His_kinase
- Simplified architecture: Cupin_2 + His_kinase
- Raw architecture: Cupin_2[34-96] | His_kinase[303-376]
- Domain count: 2
- Matched identifier: HKOC_1468128
- Positioned domains: Cupin_2 34-96 ; His_kinase 303-376
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0214385
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 496 · GCF_032081145
AssemblyASM3208114v1 · Scaffoldhaploid
Genome composition4 268 110 bp · 28,5% GCClostridioides difficile
Signal transduction countsGenes 109 · HK 53 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key