1 Response_reg#1
3-111 aa · 109 aa · 71.2% of protein
Raw token
Response_reg:3:1.45e-29:111:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
NNP04_RS16200
Response regulator, CheY family
Enterococcus faecalis · GCF_032027825
ClassRRTypeCheYLength153 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_032027825#NNP04_RS16200Stable P2CS identifier used across views.
GenomeGCF_032027825Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length153 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 153 aa (71.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa153 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:3:1.45e-29:111:111:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_032027825::NZ_JANEYI010000096.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-460Genomic interval covered by the local TCS group.
Identifiers
Old locus tagNNP04_16095RefSeq proteinWP_060812352.1
Context group ID
GCF_032027825::NZ_JANEYI010000096.1::G00019Context members
NNP04_RS16200
Partner locus tags
NNP04_RS16200
Partner old locus tags
NNP04_16095
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_060812352.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagNNP04_RS16200Primary locus identifier stored in the genes table.
Old locus tagNNP04_16095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JANEYI010000096.1Sequence record reported by the local genomic context database.
Genomic interval1-460 nt460 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-460 ntGCF_032027825::NZ_JANEYI010000096.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_032027825::NZ_JANEYI010000096.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JANEYI010000096.1All displayed genes belong to this local TCS context.
Neighborhood span1-460 nt460 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt460 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
NNP04_RS16200GCF_032027825#NNP04_RS16200
RRCheYCurrent focus
1-460 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_019841765#K6Z43_RS12075Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1611889
Simplified PFAM architecture for RROC_1611889
PFAM domain coverage: 181 / 223 aa (81.2%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-110] | Trans_reg_C[142-214]
- Domain count: 2
- Matched identifier: RROC_1611889
- Positioned domains: Response_reg 3-110 ; Trans_reg_C 142-214
Cluster members and taxonomy
Representative gene: GCF_019841765#K6Z43_RS12075
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 351 · GCF_032027825
AssemblyASM3202782v1 · Contighaploid
Genome composition3 321 518 bp · 37,5% GCEnterococcus faecalis
Signal transduction countsGenes 32 · HK 14 · RR 18CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key