1 HisKA#1
25-90 aa · 66 aa · 25.7% of protein
Raw token
HisKA:25:0.0000000000000243:90:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FOS05_RS28040
Histidine kinase, Classic
Bacillus mycoides · GCF_031317085
ClassHKTypeClassicLength257 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031317085#FOS05_RS28040Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length257 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 257 aa (65.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa257 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
136-236 aa · 101 aa · 39.3% of protein
Raw token
HATPase_c:136:5.6e-17:236:101:109- Raw architecture: HisKA:25:0.0000000000000243:90:66:64#HATPase_c:136:5.6e-17:236:101:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031317085::NZ_VLYU01000101.1::G00074
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3127-3901Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFOS05_28415RefSeq proteinWP_309439461.1
Context group ID
GCF_031317085::NZ_VLYU01000101.1::G00074Context members
FOS05_RS28040
Partner locus tags
FOS05_RS28040
Partner old locus tags
FOS05_28415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309439461.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFOS05_RS28040Primary locus identifier stored in the genes table.
Old locus tagFOS05_28415Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VLYU01000101.1Sequence record reported by the local genomic context database.
Genomic interval3 127-3 901 nt775 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 127-3 901 ntGCF_031317085::NZ_VLYU01000101.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031317085::NZ_VLYU01000101.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VLYU01000101.1All displayed genes belong to this local TCS context.
Neighborhood span3 127-3 901 nt775 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 127 nt3 901 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FOS05_RS28040GCF_031317085#FOS05_RS28040
HKClassicCurrent focus
3 127-3 901 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS12015Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1533638
Simplified PFAM architecture for HKOC_1533638
PFAM domain coverage: 226 / 490 aa (46.1%)
1 aa490 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[181-233] | HisKA[259-323] | HATPase_c[370-477]
- Domain count: 3
- Matched identifier: HKOC_1533638
- Positioned domains: HAMP 181-233 ; HisKA 259-323 ; HATPase_c 370-477
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS12015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031317085
AssemblyASM3131708v1 · Scaffoldhaploid
Genome composition5 507 904 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key