1 HisKA_3#1
349-409 aa · 61 aa · 10.9% of protein
Raw token
HisKA_3:349:0.00000606:409:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FOS05_RS13550
Histidine kinase, Classic
Bacillus mycoides · GCF_031317085
ClassHKTypeClassicLength560 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031317085#FOS05_RS13550Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length560 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 560 aa (27.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa560 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
452-546 aa · 95 aa · 17.0% of protein
Raw token
HATPase_c:452:7.54e-21:546:105:109- Raw architecture: HisKA_3:349:0.00000606:409:65:68#HATPase_c:452:7.54e-21:546:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031317085::NZ_VLYU01000008.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span182085-184348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFOS05_13665RefSeq proteinWP_309439203.1
Context group ID
GCF_031317085::NZ_VLYU01000008.1::G00026Context members
FOS05_RS13545FOS05_RS13550
Partner locus tags
FOS05_RS13545FOS05_RS13550
Partner old locus tags
FOS05_13660FOS05_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309439203.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFOS05_RS13550Primary locus identifier stored in the genes table.
Old locus tagFOS05_13665Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VLYU01000008.1Sequence record reported by the local genomic context database.
Genomic interval182 665-184 348 nt1 684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span182 085-184 348 ntGCF_031317085::NZ_VLYU01000008.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031317085::NZ_VLYU01000008.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VLYU01000008.1All displayed genes belong to this local TCS context.
Neighborhood span182 085-184 348 nt2 264 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 085 nt184 348 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FOS05_RS13545GCF_031317085#FOS05_RS13545
RRNarL
182 085-182 693 nt · Reverse (-)
FOS05_RS13550GCF_031317085#FOS05_RS13550
HKClassicCurrent focus
182 665-184 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS11575Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745474
Simplified PFAM architecture for HKOC_0745474
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745474
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS11575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031317085
AssemblyASM3131708v1 · Scaffoldhaploid
Genome composition5 507 904 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key