1 Response_reg#1
6-117 aa · 112 aa · 55.4% of protein
Raw token
Response_reg:6:3.21e-21:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FOS05_RS13545
Response regulator NarL family
Bacillus mycoides · GCF_031317085
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031317085#FOS05_RS13545Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 202 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
137-192 aa · 56 aa · 27.7% of protein
Raw token
HTH_LUXR:137:2.48e-16:192:56:58- Raw architecture: Response_reg:6:3.21e-21:117:112:111#HTH_LUXR:137:2.48e-16:192:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031317085::NZ_VLYU01000008.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span182085-184348Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFOS05_13660RefSeq proteinWP_002128205.1
Context group ID
GCF_031317085::NZ_VLYU01000008.1::G00026Context members
FOS05_RS13545FOS05_RS13550
Partner locus tags
FOS05_RS13545FOS05_RS13550
Partner old locus tags
FOS05_13660FOS05_13665
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002128205.1Primary protein accession used for annex mappings.
UniProt accessionJ8F5V3Primary UniProt accession resolved in the annex database.
UniProt IDJ8F5V3_BACCEDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFOS05_RS13545Primary locus identifier stored in the genes table.
Old locus tagFOS05_13660Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VLYU01000008.1Sequence record reported by the local genomic context database.
Genomic interval182 085-182 693 nt609 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span182 085-184 348 ntGCF_031317085::NZ_VLYU01000008.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031317085::NZ_VLYU01000008.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VLYU01000008.1All displayed genes belong to this local TCS context.
Neighborhood span182 085-184 348 nt2 264 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
182 085 nt184 348 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FOS05_RS13545GCF_031317085#FOS05_RS13545
RRNarLCurrent focus
182 085-182 693 nt · Reverse (-)
FOS05_RS13550GCF_031317085#FOS05_RS13550
HKClassic
182 665-184 348 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS26500Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2114715
Simplified PFAM architecture for RROC_2114715
PFAM domain coverage: 165 / 202 aa (81.7%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[138-191]
- Domain count: 2
- Matched identifier: RROC_2114715
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 138-191 ; GerE 138-191
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS26500
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 103 total members. Page 1 / 3.
GCF_000003925#BMYCO0001_RS26500 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031317085
AssemblyASM3131708v1 · Scaffoldhaploid
Genome composition5 507 904 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key