1 Response_reg#1
5-114 aa · 110 aa · 47.8% of protein
Raw token
Response_reg:5:1.11e-32:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FOS05_RS07960
Response regulator OmpR family
Bacillus mycoides · GCF_031317085
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031317085#FOS05_RS07960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 230 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:151:7.72e-36:227:77:77- Raw architecture: Response_reg:5:1.11e-32:114:111:111#Trans_reg_C:151:7.72e-36:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031317085::NZ_VLYU01000004.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span146717-148346Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFOS05_08030RefSeq proteinWP_002129319.1
Context group ID
GCF_031317085::NZ_VLYU01000004.1::G00021Context members
FOS05_RS07960FOS05_RS07965
Partner locus tags
FOS05_RS07960FOS05_RS07965
Partner old locus tags
FOS05_08030FOS05_08035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002129319.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFOS05_RS07960Primary locus identifier stored in the genes table.
Old locus tagFOS05_08030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VLYU01000004.1Sequence record reported by the local genomic context database.
Genomic interval146 717-147 409 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span146 717-148 346 ntGCF_031317085::NZ_VLYU01000004.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031317085::NZ_VLYU01000004.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VLYU01000004.1All displayed genes belong to this local TCS context.
Neighborhood span146 717-148 346 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
146 717 nt148 346 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FOS05_RS07960GCF_031317085#FOS05_RS07960
RROmpRCurrent focus
146 717-147 409 nt · Forward (+)
FOS05_RS07965GCF_031317085#FOS05_RS07965
HKClassic
147 411-148 346 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS05130Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1201184
Simplified PFAM architecture for RROC_1201184
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1201184
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS05130
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031317085
AssemblyASM3131708v1 · Scaffoldhaploid
Genome composition5 507 904 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key