1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:2.21e-40:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FOS05_RS06680
Response regulator OmpR family
Bacillus mycoides · GCF_031317085
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031317085#FOS05_RS06680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1e-28:221:77:77- Raw architecture: Response_reg:3:2.21e-40:112:111:111#Trans_reg_C:148:1e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031317085::NZ_VLYU01000003.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span335120-337233Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFOS05_06745RefSeq proteinWP_002130014.1
Context group ID
GCF_031317085::NZ_VLYU01000003.1::G00056Context members
FOS05_RS06675FOS05_RS06680
Partner locus tags
FOS05_RS06675FOS05_RS06680
Partner old locus tags
FOS05_06740FOS05_06745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002130014.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFOS05_RS06680Primary locus identifier stored in the genes table.
Old locus tagFOS05_06745Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VLYU01000003.1Sequence record reported by the local genomic context database.
Genomic interval336 562-337 233 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span335 120-337 233 ntGCF_031317085::NZ_VLYU01000003.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031317085::NZ_VLYU01000003.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VLYU01000003.1All displayed genes belong to this local TCS context.
Neighborhood span335 120-337 233 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
335 120 nt337 233 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FOS05_RS06675GCF_031317085#FOS05_RS06675
HKClassic
335 120-336 550 nt · Reverse (-)
FOS05_RS06680GCF_031317085#FOS05_RS06680
RROmpRCurrent focus
336 562-337 233 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000291315#IEY_RS01565Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1588544
Simplified PFAM architecture for RROC_1588544
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1588544
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000291315#IEY_RS01565
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031317085
AssemblyASM3131708v1 · Scaffoldhaploid
Genome composition5 507 904 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key