1 Response_reg#1
4-84 aa · 81 aa · 95.3% of protein
Raw token
Response_reg:4:2.96e-25:84:81:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FO524_RS30340
Response regulator, CheY family
Bacillus mycoides · GCF_031316615
ClassRRTypeCheYLength85 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031316615#FO524_RS30340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length85 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage81 / 85 aa (95.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa85 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:2.96e-25:84:81:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031316615::NZ_VKPV01000291.1::G00053
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFO524_30605RefSeq proteinWP_309461468.1
Context group ID
GCF_031316615::NZ_VKPV01000291.1::G00053Context members
FO524_RS30340
Partner locus tags
FO524_RS30340
Partner old locus tags
FO524_30605
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309461468.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFO524_RS30340Primary locus identifier stored in the genes table.
Old locus tagFO524_30605Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VKPV01000291.1Sequence record reported by the local genomic context database.
Genomic interval1-255 nt255 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-255 ntGCF_031316615::NZ_VKPV01000291.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031316615::NZ_VKPV01000291.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VKPV01000291.1All displayed genes belong to this local TCS context.
Neighborhood span1-255 nt255 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
FO524_RS30340GCF_031316615#FO524_RS30340
RRCheYCurrent focus
1-255 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031316615#FO524_RS30340The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2475230
Simplified PFAM architecture for RROC_2475230
PFAM domain coverage: 81 / 85 aa (95.3%)
1 aa85 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-84]
- Domain count: 1
- Matched identifier: RROC_2475230
- Positioned domains: Response_reg 4-84
Cluster members and taxonomy
Representative gene: GCF_031316615#FO524_RS30340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031316615
AssemblyASM3131661v1 · Scaffoldhaploid
Genome composition5 727 111 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key