1 Response_reg#1
6-115 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:6:7.25e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
FO524_RS12730
Response regulator OmpR family
Bacillus mycoides · GCF_031316615
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031316615#FO524_RS12730Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage180 / 221 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-219 aa · 70 aa · 31.7% of protein
Raw token
Trans_reg_C:150:4.91e-30:219:75:77- Raw architecture: Response_reg:6:7.25e-35:115:111:111#Trans_reg_C:150:4.91e-30:219:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031316615::NZ_VKPV01000012.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59041-61171Genomic interval covered by the local TCS group.
Identifiers
Old locus tagFO524_12785RefSeq proteinWP_000800741.1
Context group ID
GCF_031316615::NZ_VKPV01000012.1::G00014Context members
FO524_RS12725FO524_RS12730
Partner locus tags
FO524_RS12725FO524_RS12730
Partner old locus tags
FO524_12780FO524_12785
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000800741.1Primary protein accession used for annex mappings.
UniProt accessionR8HNG0Primary UniProt accession resolved in the annex database.
UniProt IDR8HNG0_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagFO524_RS12730Primary locus identifier stored in the genes table.
Old locus tagFO524_12785Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_VKPV01000012.1Sequence record reported by the local genomic context database.
Genomic interval60 506-61 171 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 041-61 171 ntGCF_031316615::NZ_VKPV01000012.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031316615::NZ_VKPV01000012.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_VKPV01000012.1All displayed genes belong to this local TCS context.
Neighborhood span59 041-61 171 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 041 nt61 171 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
FO524_RS12725GCF_031316615#FO524_RS12725
HKClassic
59 041-60 513 nt · Reverse (-)
FO524_RS12730GCF_031316615#FO524_RS12730
RROmpRCurrent focus
60 506-61 171 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS12010Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1677545
Simplified PFAM architecture for RROC_1677545
PFAM domain coverage: 178 / 221 aa (80.5%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[150-218]
- Domain count: 2
- Matched identifier: RROC_1677545
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 150-218 ; Trans_reg_C 150-218
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS12010
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_031316615
AssemblyASM3131661v1 · Scaffoldhaploid
Genome composition5 727 111 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 133 · HK 71 · RR 62CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key