1 HAMP#1
208-277 aa · 70 aa · 11.8% of protein
Raw token
HAMP:208:0.00000000000000182:277:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3W90_RS07355
Histidine kinase, Classic
Bifidobacterium sp. · GCF_031295905
ClassHKTypeClassicLength593 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031295905#Q3W90_RS07355Stable P2CS identifier used across views.
GenomeGCF_031295905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length593 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage288 / 593 aa (48.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa593 aa
Domain-by-domain annotation3 items
2 HisKA#2
288-357 aa · 70 aa · 11.8% of protein
Raw token
HisKA:288:2.38e-16:357:70:643 HATPase_c#3
421-568 aa · 148 aa · 25.0% of protein
Raw token
HATPase_c:421:6.71e-21:568:148:109- Raw architecture: HAMP:208:0.00000000000000182:277:70:69#HisKA:288:2.38e-16:357:70:64#HATPase_c:421:6.71e-21:568:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031295905::NZ_JAUMNL010000033.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span46482-49069Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ3W90_07350RefSeq proteinWP_035010459.1
Context group ID
GCF_031295905::NZ_JAUMNL010000033.1::G00013Context members
Q3W90_RS07355Q3W90_RS07360
Partner locus tags
Q3W90_RS07355Q3W90_RS07360
Partner old locus tags
Q3W90_07350Q3W90_07355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_035010459.1Primary protein accession used for annex mappings.
UniProt accessionA0A2R4G5I3Primary UniProt accession resolved in the annex database.
UniProt IDA0A2R4G5I3_BIFADDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3W90_RS07355Primary locus identifier stored in the genes table.
Old locus tagQ3W90_07350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUMNL010000033.1Sequence record reported by the local genomic context database.
Genomic interval46 482-48 263 nt1 782 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span46 482-49 069 ntGCF_031295905::NZ_JAUMNL010000033.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031295905::NZ_JAUMNL010000033.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMNL010000033.1All displayed genes belong to this local TCS context.
Neighborhood span46 482-49 069 nt2 588 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 482 nt49 069 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q3W90_RS07355GCF_031295905#Q3W90_RS07355
HKClassicCurrent focus
46 482-48 263 nt · Reverse (-)
Q3W90_RS07360GCF_031295905#Q3W90_RS07360
RROmpR
48 338-49 069 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000702865#T509_RS00300Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1093248
Simplified PFAM architecture for HKOC_1093248
PFAM domain coverage: 269 / 593 aa (45.4%)
1 aa593 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-277] | HisKA[289-357] | HATPase_c[421-567]
- Domain count: 3
- Matched identifier: HKOC_1093248
- Positioned domains: HAMP 225-277 ; HisKA 289-357 ; HATPase_c 421-567
Cluster members and taxonomy
Representative gene: GCF_000702865#T509_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_031295905
AssemblyASM3129590v1 · Contighaploid
Genome composition2 248 906 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key