1 Response_reg#1
13-122 aa · 110 aa · 41.0% of protein
Raw token
Response_reg:13:8.54e-38:122:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3W90_RS07270
Response regulator OmpR family
Bifidobacterium sp. · GCF_031295905
ClassRRTypeOmpRLength268 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031295905#Q3W90_RS07270Stable P2CS identifier used across views.
GenomeGCF_031295905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length268 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage211 / 268 aa (78.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa268 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
163-263 aa · 101 aa · 37.7% of protein
Raw token
Trans_reg_C:163:9.2e-25:263:101:77- Raw architecture: Response_reg:13:8.54e-38:122:111:111#Trans_reg_C:163:9.2e-25:263:101:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031295905::NZ_JAUMNL010000033.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21936-24431Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ3W90_07265RefSeq proteinWP_309465936.1
Context group ID
GCF_031295905::NZ_JAUMNL010000033.1::G00012Context members
Q3W90_RS07265Q3W90_RS07270
Partner locus tags
Q3W90_RS07265Q3W90_RS07270
Partner old locus tags
Q3W90_07260Q3W90_07265
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309465936.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3W90_RS07270Primary locus identifier stored in the genes table.
Old locus tagQ3W90_07265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUMNL010000033.1Sequence record reported by the local genomic context database.
Genomic interval23 625-24 431 nt807 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span21 936-24 431 ntGCF_031295905::NZ_JAUMNL010000033.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031295905::NZ_JAUMNL010000033.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMNL010000033.1All displayed genes belong to this local TCS context.
Neighborhood span21 936-24 431 nt2 496 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 936 nt24 431 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q3W90_RS07265GCF_031295905#Q3W90_RS07265
HKClassic
21 936-23 618 nt · Reverse (-)
Q3W90_RS07270GCF_031295905#Q3W90_RS07270
RROmpRCurrent focus
23 625-24 431 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031295905#Q3W90_RS07270The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C + Trans_reg_C3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0621669
Simplified PFAM architecture for RROC_0621669
PFAM domain coverage: 198 / 268 aa (73.9%)
1 aa268 aa
Response_regTrans_reg_CTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C + Trans_reg_C
- Raw architecture: Response_reg[13-122] | Trans_reg_C[165-210] | Trans_reg_C[222-263]
- Domain count: 3
- Matched identifier: RROC_0621669
- Positioned domains: Response_reg 13-122 ; Trans_reg_C 165-210 ; Trans_reg_C 222-263
Cluster members and taxonomy
Representative gene: GCF_031295905#Q3W90_RS07270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_031295905
AssemblyASM3129590v1 · Contighaploid
Genome composition2 248 906 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key