1 Response_reg#1
16-130 aa · 115 aa · 52.0% of protein
Raw token
Response_reg:16:1.45e-17:130:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3W90_RS01350
Response regulator NarL family
Bifidobacterium sp. · GCF_031295905
ClassRRTypeNarLLength221 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031295905#Q3W90_RS01350Stable P2CS identifier used across views.
GenomeGCF_031295905Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 221 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
159-214 aa · 56 aa · 25.3% of protein
Raw token
HTH_LUXR:159:5.52e-18:214:56:58- Raw architecture: Response_reg:16:1.45e-17:130:116:111#HTH_LUXR:159:5.52e-18:214:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031295905::NZ_JAUMNL010000007.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span31719-32384Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ3W90_01350RefSeq proteinWP_309465701.1
Context group ID
GCF_031295905::NZ_JAUMNL010000007.1::G00006Context members
Q3W90_RS01350
Partner locus tags
Q3W90_RS01350
Partner old locus tags
Q3W90_01350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309465701.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3W90_RS01350Primary locus identifier stored in the genes table.
Old locus tagQ3W90_01350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUMNL010000007.1Sequence record reported by the local genomic context database.
Genomic interval31 719-32 384 nt666 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 719-32 384 ntGCF_031295905::NZ_JAUMNL010000007.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031295905::NZ_JAUMNL010000007.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMNL010000007.1All displayed genes belong to this local TCS context.
Neighborhood span31 719-32 384 nt666 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 719 nt32 384 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q3W90_RS01350GCF_031295905#Q3W90_RS01350
RRNarLCurrent focus
31 719-32 384 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031295905#Q3W90_RS01350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1703779
Simplified PFAM architecture for RROC_1703779
PFAM domain coverage: 167 / 221 aa (75.6%)
1 aa221 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[16-129] | GerE[161-213]
- Domain count: 2
- Matched identifier: RROC_1703779
- Positioned domains: Response_reg 16-129 ; GerE 161-213
Cluster members and taxonomy
Representative gene: GCF_031295905#Q3W90_RS01350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_031295905
AssemblyASM3129590v1 · Contighaploid
Genome composition2 248 906 bp · 59,5% GCBifidobacterium sp.
Signal transduction countsGenes 28 · HK 12 · RR 15CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key