1 Response_reg#1
60-141 aa · 82 aa · 30.1% of protein
Raw token
Response_reg:60:0.00000022:141:86:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3X41_RS01940
Response regulator LytTR family
Bifidobacterium sp. · GCF_031294985
ClassRRTypeLytTRLength272 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031294985#Q3X41_RS01940Stable P2CS identifier used across views.
GenomeGCF_031294985Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 272 aa (59.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 LytTR#2
169-247 aa · 79 aa · 29.0% of protein
Raw token
LytTR:169:3.48e-16:247:85:98- Raw architecture: Response_reg:60:0.00000022:141:86:111#LytTR:169:3.48e-16:247:85:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031294985::NZ_JAUMPG010000028.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span33948-34766Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ3X41_01945RefSeq proteinWP_215661985.1
Context group ID
GCF_031294985::NZ_JAUMPG010000028.1::G00003Context members
Q3X41_RS01940
Partner locus tags
Q3X41_RS01940
Partner old locus tags
Q3X41_01945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_215661985.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3X41_RS01940Primary locus identifier stored in the genes table.
Old locus tagQ3X41_01945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUMPG010000028.1Sequence record reported by the local genomic context database.
Genomic interval33 948-34 766 nt819 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span33 948-34 766 ntGCF_031294985::NZ_JAUMPG010000028.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031294985::NZ_JAUMPG010000028.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMPG010000028.1All displayed genes belong to this local TCS context.
Neighborhood span33 948-34 766 nt819 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 948 nt34 766 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q3X41_RS01940GCF_031294985#Q3X41_RS01940
RRLytTRCurrent focus
33 948-34 766 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018785705#GPK46_RS01895Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0610825
Simplified PFAM architecture for RROC_0610825
PFAM domain coverage: 180 / 272 aa (66.2%)
1 aa272 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[40-141] | LytTR[170-247]
- Domain count: 2
- Matched identifier: RROC_0610825
- Positioned domains: Response_reg 40-141 ; LytTR 170-247
Cluster members and taxonomy
Representative gene: GCF_018785705#GPK46_RS01895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_031294985
AssemblyASM3129498v1 · Contighaploid
Genome composition2 283 074 bp · 59,0% GCBifidobacterium sp.
Signal transduction countsGenes 28 · HK 11 · RR 15CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key