1 Response_reg#1
46-152 aa · 107 aa · 41.0% of protein
Raw token
Response_reg:46:1.38e-29:152:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q3X93_RS05610
Response regulator, AmiR_NasR family
Bifidobacterium sp. · GCF_031293355
ClassRRTypeAmiR_NasRLength261 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031293355#Q3X93_RS05610Stable P2CS identifier used across views.
GenomeGCF_031293355Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regANTAR
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 261 aa (59.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 ANTARSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 ANTAR#2
199-247 aa · 49 aa · 18.8% of protein
Raw token
ANTAR:199:3.06e-17:247:49:49- Raw architecture: Response_reg:46:1.38e-29:152:108:111#ANTAR:199:3.06e-17:247:49:49
- Domain description: 1 Response_reg,1 ANTAR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031293355::NZ_JAUMRR010000076.1::G00008
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span103207-103992Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQ3X93_05600RefSeq proteinWP_309413882.1
Context group ID
GCF_031293355::NZ_JAUMRR010000076.1::G00008Context members
Q3X93_RS05610
Partner locus tags
Q3X93_RS05610
Partner old locus tags
Q3X93_05600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_309413882.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ3X93_RS05610Primary locus identifier stored in the genes table.
Old locus tagQ3X93_05600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUMRR010000076.1Sequence record reported by the local genomic context database.
Genomic interval103 207-103 992 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span103 207-103 992 ntGCF_031293355::NZ_JAUMRR010000076.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031293355::NZ_JAUMRR010000076.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUMRR010000076.1All displayed genes belong to this local TCS context.
Neighborhood span103 207-103 992 nt786 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
103 207 nt103 992 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
Q3X93_RS05610GCF_031293355#Q3X93_RS05610
RRAmiR_NasRCurrent focus
103 207-103 992 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_031293355#Q3X93_RS05610The current gene is the representative for this cluster.
PFAM architectureResponse_reg + ANTAR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0651269
Simplified PFAM architecture for RROC_0651269
PFAM domain coverage: 160 / 261 aa (61.3%)
1 aa261 aa
Response_regANTAR
- Simplified architecture: Response_reg + ANTAR
- Raw architecture: Response_reg[46-152] | ANTAR[195-247]
- Domain count: 2
- Matched identifier: RROC_0651269
- Positioned domains: Response_reg 46-152 ; ANTAR 195-247
Cluster members and taxonomy
Representative gene: GCF_031293355#Q3X93_RS05610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 41 200 · GCF_031293355
AssemblyASM3129335v1 · Contighaploid
Genome composition2 213 840 bp · 60,5% GCBifidobacterium sp.
Signal transduction countsGenes 22 · HK 9 · RR 11CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key