1 HisKA#1
124-185 aa · 62 aa · 18.0% of protein
Raw token
HisKA:124:0.00000000121:185:62:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS18780
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength344 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS18780Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length344 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage161 / 344 aa (46.8%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa344 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
238-336 aa · 99 aa · 28.8% of protein
Raw token
HATPase_c:238:4.76e-21:336:100:109- Raw architecture: HisKA:124:0.00000000121:185:62:64#HATPase_c:238:4.76e-21:336:100:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00048
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3770086-3771807Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_38840RefSeq proteinWP_228106068.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00048Context members
TEMA_RS18775TEMA_RS18780
Partner locus tags
TEMA_RS18775TEMA_RS18780
Partner old locus tags
TEMA_38830TEMA_38840
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106068.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q648Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q648_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS18780Primary locus identifier stored in the genes table.
Old locus tagTEMA_38840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 770 773-3 771 807 nt1 035 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 770 086-3 771 807 ntGCF_031202285::NZ_CP101637.1::G00048
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00048Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 770 086-3 771 807 nt1 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 770 086 nt3 771 807 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS18775GCF_031202285#TEMA_RS18775
RROmpR
3 770 086-3 770 769 nt · Forward (+)
TEMA_RS18780GCF_031202285#TEMA_RS18780
HKClassicCurrent focus
3 770 773-3 771 807 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS15970Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2825538
Simplified PFAM architecture for HKOC_2825538
PFAM domain coverage: 166 / 344 aa (48.3%)
1 aa344 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[123-185] | HATPase_c[233-335]
- Domain count: 2
- Matched identifier: HKOC_2825538
- Positioned domains: HisKA 123-185 ; HATPase_c 233-335
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS15970
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key