1 His_kinase#1
205-283 aa · 79 aa · 19.8% of protein
Raw token
His_kinase:205:7.73e-32:283:80:80P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS17620
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength398 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS17620Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
His_kinaseHATPase_c
Protein length398 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 398 aa (46.0%)Merged over positioned domains only.
Domain description1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa398 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
293-396 aa · 104 aa · 26.1% of protein
Raw token
HATPase_c:293:0.000000049:396:114:109- Raw architecture: His_kinase:205:7.73e-32:283:80:80#HATPase_c:293:0.000000049:396:114:109
- Domain description: 1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3526119-3528047Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_36370RefSeq proteinWP_228105134.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00045Context members
TEMA_RS17620TEMA_RS17625
Partner locus tags
TEMA_RS17620TEMA_RS17625
Partner old locus tags
TEMA_36370TEMA_36380
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105134.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q568Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q568_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS17620Primary locus identifier stored in the genes table.
Old locus tagTEMA_36370Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 526 119-3 527 315 nt1 197 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 526 119-3 528 047 ntGCF_031202285::NZ_CP101637.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 526 119-3 528 047 nt1 929 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 526 119 nt3 528 047 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS17620GCF_031202285#TEMA_RS17620
HKClassicCurrent focus
3 526 119-3 527 315 nt · Forward (+)
TEMA_RS17625GCF_031202285#TEMA_RS17625
RRLytTR
3 527 319-3 528 047 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS11070Use this link to inspect the representative gene detail.
PFAM architecture5TM-5TMR_LYT + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2464147
Simplified PFAM architecture for HKOC_2464147
PFAM domain coverage: 340 / 398 aa (85.4%)
1 aa398 aa
5TM-5TMR_LYTHis_kinaseHATPase_c
- Simplified architecture: 5TM-5TMR_LYT + His_kinase + HATPase_c
- Raw architecture: 5TM-5TMR_LYT[27-190] | His_kinase[205-283] | HATPase_c[298-394]
- Domain count: 3
- Matched identifier: HKOC_2464147
- Positioned domains: 5TM-5TMR_LYT 27-190 ; His_kinase 205-283 ; HATPase_c 298-394
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key