1 HisKA#1
82-147 aa · 66 aa · 21.8% of protein
Raw token
HisKA:82:0.00000000000000579:147:66:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS17575
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength303 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031202285#TEMA_RS17575Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length303 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage158 / 303 aa (52.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa303 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
194-285 aa · 92 aa · 30.4% of protein
Raw token
HATPase_c:194:0.0000000000000104:285:93:109- Raw architecture: HisKA:82:0.00000000000000579:147:66:64#HATPase_c:194:0.0000000000000104:285:93:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031202285::NZ_CP101637.1::G00044
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span3517377-3518288Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_36280RefSeq proteinWP_228105143.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00044Context members
TEMA_RS17575
Partner locus tags
TEMA_RS17575
Partner old locus tags
TEMA_36280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105143.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q6C5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q6C5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS17575Primary locus identifier stored in the genes table.
Old locus tagTEMA_36280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 517 377-3 518 288 nt912 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 517 377-3 518 288 ntGCF_031202285::NZ_CP101637.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 517 377-3 518 288 nt912 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 517 377 nt3 518 288 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TEMA_RS17575GCF_031202285#TEMA_RS17575
HKClassicCurrent focus
3 517 377-3 518 288 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS11115Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2884297
Simplified PFAM architecture for HKOC_2884297
PFAM domain coverage: 156 / 303 aa (51.5%)
1 aa303 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[83-147] | HATPase_c[195-285]
- Domain count: 2
- Matched identifier: HKOC_2884297
- Positioned domains: HisKA 83-147 ; HATPase_c 195-285
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS11115
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key