1 HisKA#1
51-105 aa · 55 aa · 20.6% of protein
Raw token
HisKA:51:0.000000457:105:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS16540
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength267 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS16540Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 267 aa (62.5%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
151-262 aa · 112 aa · 41.9% of protein
Raw token
HATPase_c:151:1.44e-23:262:112:109- Raw architecture: HisKA:51:0.000000457:105:61:64#HATPase_c:151:1.44e-23:262:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3292818-3294499Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_34180RefSeq proteinWP_331476749.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00038Context members
TEMA_RS16535TEMA_RS16540
Partner locus tags
TEMA_RS16535TEMA_RS16540
Partner old locus tags
TEMA_34170TEMA_34180
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_331476749.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS16540Primary locus identifier stored in the genes table.
Old locus tagTEMA_34180Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 293 696-3 294 499 nt804 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 292 818-3 294 499 ntGCF_031202285::NZ_CP101637.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 292 818-3 294 499 nt1 682 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 292 818 nt3 294 499 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS16535GCF_031202285#TEMA_RS16535
RROmpR
3 292 818-3 293 489 nt · Forward (+)
TEMA_RS16540GCF_031202285#TEMA_RS16540
HKClassicCurrent focus
3 293 696-3 294 499 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS12165Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2909391
Simplified PFAM architecture for HKOC_2909391
PFAM domain coverage: 111 / 267 aa (41.6%)
1 aa267 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[151-261]
- Domain count: 1
- Matched identifier: HKOC_2909391
- Positioned domains: HATPase_c 151-261
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS12165
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key