1 CheW#1
22-158 aa · 137 aa · 44.5% of protein
Raw token
CheW:22:2.37e-29:158:138:138P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS15925
Response regulator CheV family
Terrisporobacter mayombei · GCF_031202285
ClassRRTypeCheVLength308 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031202285#TEMA_RS15925Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
CheWResponse_reg
Protein length308 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage259 / 308 aa (84.1%)Merged over positioned domains only.
Domain description1 CheW,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa308 aa
Domain-by-domain annotation2 items
2 Response_reg#2
182-303 aa · 122 aa · 39.6% of protein
Raw token
Response_reg:182:0.00000000000000443:303:123:111- Raw architecture: CheW:22:2.37e-29:158:138:138#Response_reg:182:0.00000000000000443:303:123:111
- Domain description: 1 CheW,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031202285::NZ_CP101637.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3172680-3173606Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_32920RefSeq proteinWP_228105456.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00036Context members
TEMA_RS15925
Partner locus tags
TEMA_RS15925
Partner old locus tags
TEMA_32920
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105456.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q6F9Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q6F9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS15925Primary locus identifier stored in the genes table.
Old locus tagTEMA_32920Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval3 172 680-3 173 606 nt927 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 172 680-3 173 606 ntGCF_031202285::NZ_CP101637.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span3 172 680-3 173 606 nt927 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 172 680 nt3 173 606 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TEMA_RS15925GCF_031202285#TEMA_RS15925
RRCheVCurrent focus
3 172 680-3 173 606 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS12780Use this link to inspect the representative gene detail.
PFAM architectureCheW + Response_reg2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0558631
Simplified PFAM architecture for RROC_0558631
PFAM domain coverage: 254 / 308 aa (82.5%)
1 aa308 aa
CheWResponse_reg
- Simplified architecture: CheW + Response_reg
- Raw architecture: CheW[23-157] | Response_reg[182-300]
- Domain count: 2
- Matched identifier: RROC_0558631
- Positioned domains: CheW 23-157 ; Response_reg 182-300
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS12780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key