1 Response_reg#1
5-114 aa · 110 aa · 45.8% of protein
Raw token
Response_reg:5:4.42e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS11810
Response regulator OmpR family
Terrisporobacter mayombei · GCF_031202285
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS11810Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 240 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-236 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:160:1.16e-30:236:77:77- Raw architecture: Response_reg:5:4.42e-35:114:111:111#Trans_reg_C:160:1.16e-30:236:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2378380-2380693Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_24470RefSeq proteinWP_228105651.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00031Context members
TEMA_RS11810TEMA_RS11815
Partner locus tags
TEMA_RS11810TEMA_RS11815
Partner old locus tags
TEMA_24470TEMA_24480
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228105651.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q4B5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q4B5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS11810Primary locus identifier stored in the genes table.
Old locus tagTEMA_24470Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval2 378 380-2 379 102 nt723 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 378 380-2 380 693 ntGCF_031202285::NZ_CP101637.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span2 378 380-2 380 693 nt2 314 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 378 380 nt2 380 693 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS11810GCF_031202285#TEMA_RS11810
RROmpRCurrent focus
2 378 380-2 379 102 nt · Forward (+)
TEMA_RS11815GCF_031202285#TEMA_RS11815
HKClassic
2 379 074-2 380 693 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS13765Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0894558
Simplified PFAM architecture for RROC_0894558
PFAM domain coverage: 186 / 240 aa (77.5%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[160-235]
- Domain count: 2
- Matched identifier: RROC_0894558
- Positioned domains: Response_reg 5-114 ; Trans_reg_C 160-235
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS13765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key