1 Response_reg#1
12-126 aa · 115 aa · 41.8% of protein
Raw token
Response_reg:12:1.18e-24:126:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS08985
Response regulator Spo0A family
Terrisporobacter mayombei · GCF_031202285
ClassRRTypeSpo0ALength275 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_031202285#TEMA_RS08985Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length275 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 275 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa275 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
164-267 aa · 104 aa · 37.8% of protein
Raw token
Spo0A_C:164:1.77e-65:267:104:104- Raw architecture: Response_reg:12:1.18e-24:126:115:111#Spo0A_C:164:1.77e-65:267:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_031202285::NZ_CP101637.1::G00024
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1783449-1784276Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_18750RefSeq proteinWP_026255020.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00024Context members
TEMA_RS08985
Partner locus tags
TEMA_RS08985
Partner old locus tags
TEMA_18750
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_026255020.1Primary protein accession used for annex mappings.
UniProt accessionA0AAX2ZBT5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAX2ZBT5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed9 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS08985Primary locus identifier stored in the genes table.
Old locus tagTEMA_18750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval1 783 449-1 784 276 nt828 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 783 449-1 784 276 ntGCF_031202285::NZ_CP101637.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span1 783 449-1 784 276 nt828 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 783 449 nt1 784 276 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
TEMA_RS08985GCF_031202285#TEMA_RS08985
RRSpo0ACurrent focus
1 783 449-1 784 276 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000373865#B130_RS0103575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0604686
Simplified PFAM architecture for RROC_0604686
PFAM domain coverage: 217 / 275 aa (78.9%)
1 aa275 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[12-124] | Spo0A_C[164-267]
- Domain count: 2
- Matched identifier: RROC_0604686
- Positioned domains: Response_reg 12-124 ; Response_reg 12-124 ; Spo0A_C 164-267 ; Spo0A_C 164-267
Cluster members and taxonomy
Representative gene: GCF_000373865#B130_RS0103575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key