1 Response_reg#1
4-113 aa · 110 aa · 48.5% of protein
Raw token
Response_reg:4:1.31e-34:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS08655
Response regulator OmpR family
Terrisporobacter mayombei · GCF_031202285
ClassRRTypeOmpRLength227 aaTM0ValidatedNoCompleteYesContexttetrad
Gene IDGCF_031202285#TEMA_RS08655Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length227 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 227 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa227 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 33.9% of protein
Raw token
Trans_reg_C:147:1.2e-27:223:77:77- Raw architecture: Response_reg:4:1.31e-34:113:111:111#Trans_reg_C:147:1.2e-27:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltetradGCF_031202285::NZ_CP101637.1::G00022
Group size44 locus tags listed below.
HK / RR2 / 2Counts resolved for the local TCS neighborhood.
Context span1706911-1711062Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_18070RefSeq proteinWP_228103616.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00022Context members
TEMA_RS08640TEMA_RS08645TEMA_RS08650TEMA_RS08655
Partner locus tags
TEMA_RS08640TEMA_RS08645TEMA_RS08650TEMA_RS08655
Partner old locus tags
TEMA_18040TEMA_18050TEMA_18060TEMA_18070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228103616.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9Q1J0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9Q1J0_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS08655Primary locus identifier stored in the genes table.
Old locus tagTEMA_18070Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval1 710 379-1 711 062 nt684 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 706 911-1 711 062 ntGCF_031202285::NZ_CP101637.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltetradNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span1 706 911-1 711 062 nt4 152 nt
Members41 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 706 911 nt1 711 062 nt
Neighborhood gene cards
4 genes in the current local neighborhood.
TEMA_RS08640GCF_031202285#TEMA_RS08640
HKClassic
1 706 911-1 708 149 nt · Reverse (-)
TEMA_RS08645GCF_031202285#TEMA_RS08645
RROmpR
1 708 142-1 708 837 nt · Reverse (-)
TEMA_RS08650GCF_031202285#TEMA_RS08650
HKClassic
1 708 992-1 710 395 nt · Reverse (-)
TEMA_RS08655GCF_031202285#TEMA_RS08655
RROmpRCurrent focus
1 710 379-1 711 062 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS03270Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1380175
Simplified PFAM architecture for RROC_1380175
PFAM domain coverage: 184 / 227 aa (81.1%)
1 aa227 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-223]
- Domain count: 2
- Matched identifier: RROC_1380175
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 149-223
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS03270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key