1 dCache_1#1
181-279 aa · 99 aa · 16.9% of protein
Raw token
dCache_1:181:0.000000266:279:112:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
TEMA_RS00040
Histidine kinase, Classic
Terrisporobacter mayombei · GCF_031202285
ClassHKTypeClassicLength585 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_031202285#TEMA_RS00040Stable P2CS identifier used across views.
GenomeGCF_031202285Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Terrisporobacter
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length585 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage346 / 585 aa (59.1%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa585 aa
Domain-by-domain annotation4 items
2 HAMP#2
300-367 aa · 68 aa · 11.6% of protein
Raw token
HAMP:300:0.0000000000000248:367:68:693 His_kinase#3
382-461 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:382:3.79e-32:461:80:804 HATPase_c#4
480-578 aa · 99 aa · 16.9% of protein
Raw token
HATPase_c:480:0.0000000000559:578:106:109- Raw architecture: dCache_1:181:0.000000266:279:112:195#HAMP:300:0.0000000000000248:367:68:69#His_kinase:382:3.79e-32:461:80:80#HATPase_c:480:0.0000000000559:578:106:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_031202285::NZ_CP101637.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span8141-10644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagTEMA_00080RefSeq proteinWP_228106232.1
Context group ID
GCF_031202285::NZ_CP101637.1::G00001Context members
TEMA_RS00040TEMA_RS00045
Partner locus tags
TEMA_RS00040TEMA_RS00045
Partner old locus tags
TEMA_00080TEMA_00090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_228106232.1Primary protein accession used for annex mappings.
UniProt accessionA0ABY9PVK2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABY9PVK2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagTEMA_RS00040Primary locus identifier stored in the genes table.
Old locus tagTEMA_00080Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP101637.1Sequence record reported by the local genomic context database.
Genomic interval8 141-9 898 nt1 758 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span8 141-10 644 ntGCF_031202285::NZ_CP101637.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_031202285::NZ_CP101637.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP101637.1All displayed genes belong to this local TCS context.
Neighborhood span8 141-10 644 nt2 504 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
8 141 nt10 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
TEMA_RS00040GCF_031202285#TEMA_RS00040
HKClassicCurrent focus
8 141-9 898 nt · Forward (+)
TEMA_RS00045GCF_031202285#TEMA_RS00045
RRunclassified
9 892-10 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020748465#K0039_RS16800Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1139032
Simplified PFAM architecture for HKOC_1139032
PFAM domain coverage: 230 / 585 aa (39.3%)
1 aa585 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[316-366] | His_kinase[382-460] | HATPase_c[480-579]
- Domain count: 3
- Matched identifier: HKOC_1139032
- Positioned domains: HAMP 316-366 ; His_kinase 382-460 ; HATPase_c 480-579
Cluster members and taxonomy
Representative gene: GCF_020748465#K0039_RS16800
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 541 · GCF_031202285
AssemblyASM3120228v1 · Complete Genomereference genome · haploid
Genome composition4 064 271 bp · 29,0% GCTerrisporobacter mayombei
Signal transduction countsGenes 91 · HK 49 · RR 42CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusTerrisporobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Terrisporobacter
Related genes
Preview from the same derived genome key