1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:1.13e-39:113:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q6084_RS06960
Response regulator OmpR family
[Ruminococcus] torques · GCF_030844065
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030844065#Q6084_RS06960Stable P2CS identifier used across views.
GenomeGCF_030844065Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 224 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
149-220 aa · 72 aa · 32.1% of protein
Raw token
Trans_reg_C:149:1.36e-20:220:73:77- Raw architecture: Response_reg:4:1.13e-39:113:110:111#Trans_reg_C:149:1.36e-20:220:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030844065::NZ_JAUUOH010000051.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span13033-14930Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030844065::NZ_JAUUOH010000051.1::G00020Context members
Q6084_RS06960Q6084_RS06965
Partner locus tags
Q6084_RS06960Q6084_RS06965
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_282928346.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ6084_RS06960Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAUUOH010000051.1Sequence record reported by the local genomic context database.
Genomic interval13 033-13 707 nt675 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span13 033-14 930 ntGCF_030844065::NZ_JAUUOH010000051.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030844065::NZ_JAUUOH010000051.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUUOH010000051.1All displayed genes belong to this local TCS context.
Neighborhood span13 033-14 930 nt1 898 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
13 033 nt14 930 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q6084_RS06960GCF_030844065#Q6084_RS06960
RROmpRCurrent focus
13 033-13 707 nt · Forward (+)
Q6084_RS06965GCF_030844065#Q6084_RS06965
HKClassic
13 704-14 930 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_029984795#QNH79_RS07145Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1563928
Simplified PFAM architecture for RROC_1563928
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-220]
- Domain count: 2
- Matched identifier: RROC_1563928
- Positioned domains: Response_reg 4-113 ; Trans_reg_C 148-220
Cluster members and taxonomy
Representative gene: GCF_029984795#QNH79_RS07145
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 039 · GCF_030844065
AssemblyASM3084406v1 · Contighaploid
Genome composition2 376 979 bp · 42,0% GC[Ruminococcus] torques
Signal transduction countsGenes 45 · HK 21 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key