1 Response_reg#1
5-105 aa · 101 aa · 19.1% of protein
Raw token
Response_reg:5:2.39e-30:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q6Z71_RS02360
Response regulator, unclassified
Blautia sp. · GCF_030840025
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030840025#Q6Z71_RS02360Stable P2CS identifier used across views.
GenomeGCF_030840025Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 528 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:432:0.00000171:473:42:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.00000000269:523:37:42- Raw architecture: Response_reg:5:2.39e-30:105:101:111#HTH_AraC:432:0.00000171:473:42:42#HTH_AraC:487:0.00000000269:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030840025::NZ_JAUULE010000004.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52923-56248Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030840025::NZ_JAUULE010000004.1::G00016Context members
Q6Z71_RS02355Q6Z71_RS02360
Partner locus tags
Q6Z71_RS02355Q6Z71_RS02360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_161208605.1Primary protein accession used for annex mappings.
UniProt accessionA0A6L8TB66Primary UniProt accession resolved in the annex database.
UniProt IDA0A6L8TB66_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ6Z71_RS02360Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAUULE010000004.1Sequence record reported by the local genomic context database.
Genomic interval54 662-56 248 nt1 587 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 923-56 248 ntGCF_030840025::NZ_JAUULE010000004.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030840025::NZ_JAUULE010000004.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUULE010000004.1All displayed genes belong to this local TCS context.
Neighborhood span52 923-56 248 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 923 nt56 248 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q6Z71_RS02355GCF_030840025#Q6Z71_RS02355
HKClassic
52 923-54 662 nt · Forward (+)
Q6Z71_RS02360GCF_030840025#Q6Z71_RS02360
RRunclassifiedCurrent focus
54 662-56 248 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009876855#GT694_RS02095Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114935
Simplified PFAM architecture for RROC_0114935
PFAM domain coverage: 189 / 528 aa (35.8%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[446-523]
- Domain count: 2
- Matched identifier: RROC_0114935
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115 ; HTH_18 446-523 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_009876855#GT694_RS02095
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 955 243 · GCF_030840025
AssemblyASM3084002v1 · Contighaploid
Genome composition2 847 585 bp · 45,0% GCBlautia sp.
Signal transduction countsGenes 55 · HK 26 · RR 29CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key