1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:1.72e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
Q7W71_RS01540
Response regulator OmpR family
Bacillus mycoides · GCF_030704245
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030704245#Q7W71_RS01540Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.0% of protein
Raw token
Trans_reg_C:153:8.94e-37:229:77:77- Raw architecture: Response_reg:6:1.72e-35:115:111:111#Trans_reg_C:153:8.94e-37:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030704245::NZ_CP131924.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span266189-268379Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_030704245::NZ_CP131924.1::G00002Context members
Q7W71_RS01540Q7W71_RS01545
Partner locus tags
Q7W71_RS01540Q7W71_RS01545
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002009978.1Primary protein accession used for annex mappings.
UniProt accessionJ8GWE9Primary UniProt accession resolved in the annex database.
UniProt IDJ8GWE9_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQ7W71_RS01540Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_CP131924.1Sequence record reported by the local genomic context database.
Genomic interval266 189-266 890 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span266 189-268 379 ntGCF_030704245::NZ_CP131924.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030704245::NZ_CP131924.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP131924.1All displayed genes belong to this local TCS context.
Neighborhood span266 189-268 379 nt2 191 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
266 189 nt268 379 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
Q7W71_RS01540GCF_030704245#Q7W71_RS01540
RROmpRCurrent focus
266 189-266 890 nt · Forward (+)
Q7W71_RS01545GCF_030704245#Q7W71_RS01545
HKClassic
266 874-268 379 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS01230Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080878
Simplified PFAM architecture for RROC_1080878
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1080878
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS01230
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030704245
AssemblyASM3070424v1 · Complete Genomehaploid
Genome composition5 757 956 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 132 · HK 72 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key