1 Response_reg#1
9-133 aa · 125 aa · 50.4% of protein
Raw token
Response_reg:9:3.11e-28:133:125:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
DDE03_RS07025
Response regulator NarL family
Bifidobacterium longum subsp. longum · GCF_030414115
ClassRRTypeNarLLength248 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030414115#DDE03_RS07025Stable P2CS identifier used across views.
GenomeGCF_030414115Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length248 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 248 aa (73.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_LUXR#2
185-242 aa · 58 aa · 23.4% of protein
Raw token
HTH_LUXR:185:2.6e-23:242:58:58- Raw architecture: Response_reg:9:3.11e-28:133:125:111#HTH_LUXR:185:2.6e-23:242:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030414115::NZ_QCZN01000019.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37472-40903Genomic interval covered by the local TCS group.
Identifiers
Old locus tagDDE03_07280RefSeq proteinWP_115768953.1
Context group ID
GCF_030414115::NZ_QCZN01000019.1::G00004Context members
DDE03_RS07020DDE03_RS07025
Partner locus tags
DDE03_RS07020DDE03_RS07025
Partner old locus tags
DDE03_07275DDE03_07280
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_115768953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagDDE03_RS07025Primary locus identifier stored in the genes table.
Old locus tagDDE03_07280Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_QCZN01000019.1Sequence record reported by the local genomic context database.
Genomic interval40 157-40 903 nt747 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 472-40 903 ntGCF_030414115::NZ_QCZN01000019.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030414115::NZ_QCZN01000019.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_QCZN01000019.1All displayed genes belong to this local TCS context.
Neighborhood span37 472-40 903 nt3 432 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 472 nt40 903 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
DDE03_RS07020GCF_030414115#DDE03_RS07020
HKClassic
37 472-40 081 nt · Forward (+)
DDE03_RS07025GCF_030414115#DDE03_RS07025
RRNarLCurrent focus
40 157-40 903 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003369995#CE165_RS06325Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0746179
Simplified PFAM architecture for RROC_0746179
PFAM domain coverage: 180 / 248 aa (72.6%)
1 aa248 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[9-132] | GerE[187-242]
- Domain count: 2
- Matched identifier: RROC_0746179
- Positioned domains: Response_reg 9-132 ; Response_reg 9-132 ; GerE 187-242 ; GerE 187-242
Cluster members and taxonomy
Representative gene: GCF_003369995#CE165_RS06325
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 679 · GCF_030414115
AssemblyASM3041411v1 · Contighaploid
Genome composition2 447 802 bp · 60,0% GCBifidobacterium longum subsp. longum
Signal transduction countsGenes 20 · HK 10 · RR 10CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key