1 Response_reg#1
13-117 aa · 105 aa · 43.8% of protein
Raw token
Response_reg:13:1.06e-29:117:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF92_RS01635
Response regulator OmpR family
Bacillus cereus · GCF_030348675
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348675#QUF92_RS01635Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 240 aa (75.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.1% of protein
Raw token
Trans_reg_C:157:5.1e-34:233:77:77- Raw architecture: Response_reg:13:1.06e-29:117:106:111#Trans_reg_C:157:5.1e-34:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348675::NZ_JAUCFA010000001.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span332211-334324Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF92_01630RefSeq proteinWP_199661953.1
Context group ID
GCF_030348675::NZ_JAUCFA010000001.1::G00066Context members
QUF92_RS01630QUF92_RS01635
Partner locus tags
QUF92_RS01630QUF92_RS01635
Partner old locus tags
QUF92_01625QUF92_01630
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_199661953.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF92_RS01635Primary locus identifier stored in the genes table.
Old locus tagQUF92_01630Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFA010000001.1Sequence record reported by the local genomic context database.
Genomic interval333 602-334 324 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span332 211-334 324 ntGCF_030348675::NZ_JAUCFA010000001.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348675::NZ_JAUCFA010000001.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFA010000001.1All displayed genes belong to this local TCS context.
Neighborhood span332 211-334 324 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
332 211 nt334 324 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF92_RS01630GCF_030348675#QUF92_RS01630
HKClassic
332 211-333 605 nt · Reverse (-)
QUF92_RS01635GCF_030348675#QUF92_RS01635
RROmpRCurrent focus
333 602-334 324 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_016483205#JDS88_RS26680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0892896
Simplified PFAM architecture for RROC_0892896
PFAM domain coverage: 181 / 240 aa (75.4%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[13-119] | Trans_reg_C[160-233]
- Domain count: 2
- Matched identifier: RROC_0892896
- Positioned domains: Response_reg 13-119 ; Trans_reg_C 160-233
Cluster members and taxonomy
Representative gene: GCF_016483205#JDS88_RS26680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 396 · GCF_030348675
AssemblyASM3034867v1 · Contighaploid
Genome composition5 744 840 bp · 35,5% GCBacillus cereus
Signal transduction countsGenes 117 · HK 64 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key