1 GAF_3#1
313-384 aa · 72 aa · 11.6% of protein
Raw token
GAF_3:313:0.0000929:384:73:129P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG02_RS22830
Histidine kinase, Classic
Bacillus hominis · GCF_030348585
ClassHKTypeClassicLength619 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348585#QUG02_RS22830Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAF_3HisKA_3HATPase_c
Protein length619 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage224 / 619 aa (36.2%)Merged over positioned domains only.
Domain description1 GAF_3,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa619 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
403-467 aa · 65 aa · 10.5% of protein
Raw token
HisKA_3:403:3.19e-17:467:65:683 HATPase_c#3
517-603 aa · 87 aa · 14.1% of protein
Raw token
HATPase_c:517:0.0000000000000185:603:97:109- Raw architecture: GAF_3:313:0.0000929:384:73:129#HisKA_3:403:3.19e-17:467:65:68#HATPase_c:517:0.0000000000000185:603:97:109
- Domain description: 1 GAF_3,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348585::NZ_JAUCFG010000002.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4316747-4319219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG02_22830RefSeq proteinWP_289360556.1
Context group ID
GCF_030348585::NZ_JAUCFG010000002.1::G00045Context members
QUG02_RS22825QUG02_RS22830
Partner locus tags
QUG02_RS22825QUG02_RS22830
Partner old locus tags
QUG02_22825QUG02_22830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289360556.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7RDC4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7RDC4_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG02_RS22830Primary locus identifier stored in the genes table.
Old locus tagQUG02_22830Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFG010000002.1Sequence record reported by the local genomic context database.
Genomic interval4 317 360-4 319 219 nt1 860 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 316 747-4 319 219 ntGCF_030348585::NZ_JAUCFG010000002.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348585::NZ_JAUCFG010000002.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span4 316 747-4 319 219 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 316 747 nt4 319 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUG02_RS22825GCF_030348585#QUG02_RS22825
RRNarL
4 316 747-4 317 385 nt · Reverse (-)
QUG02_RS22830GCF_030348585#QUG02_RS22830
HKClassicCurrent focus
4 317 360-4 319 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS25185Use this link to inspect the representative gene detail.
PFAM architectureHisKA_3 + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0976631
Simplified PFAM architecture for HKOC_0976631
PFAM domain coverage: 159 / 619 aa (25.7%)
1 aa619 aa
HisKA_3HATPase_c
- Simplified architecture: HisKA_3 + HATPase_c
- Raw architecture: HisKA_3[403-467] | HATPase_c[511-604]
- Domain count: 2
- Matched identifier: HKOC_0976631
- Positioned domains: HisKA_3 403-467 ; HATPase_c 511-604
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS25185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348585
AssemblyASM3034858v1 · Contighaploid
Genome composition5 499 162 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key