1 Response_reg#1
4-116 aa · 113 aa · 53.3% of protein
Raw token
Response_reg:4:1.05e-33:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG02_RS22825
Response regulator NarL family
Bacillus hominis · GCF_030348585
ClassRRTypeNarLLength212 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348585#QUG02_RS22825Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length212 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 212 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa212 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-203 aa · 55 aa · 25.9% of protein
Raw token
HTH_LUXR:149:1.41e-24:203:55:58- Raw architecture: Response_reg:4:1.05e-33:116:113:111#HTH_LUXR:149:1.41e-24:203:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348585::NZ_JAUCFG010000002.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4316747-4319219Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG02_22825RefSeq proteinWP_071771107.1
Context group ID
GCF_030348585::NZ_JAUCFG010000002.1::G00045Context members
QUG02_RS22825QUG02_RS22830
Partner locus tags
QUG02_RS22825QUG02_RS22830
Partner old locus tags
QUG02_22825QUG02_22830
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_071771107.1Primary protein accession used for annex mappings.
UniProt accessionA0ABV3I5M7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABV3I5M7_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG02_RS22825Primary locus identifier stored in the genes table.
Old locus tagQUG02_22825Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFG010000002.1Sequence record reported by the local genomic context database.
Genomic interval4 316 747-4 317 385 nt639 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 316 747-4 319 219 ntGCF_030348585::NZ_JAUCFG010000002.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348585::NZ_JAUCFG010000002.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span4 316 747-4 319 219 nt2 473 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 316 747 nt4 319 219 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUG02_RS22825GCF_030348585#QUG02_RS22825
RRNarLCurrent focus
4 316 747-4 317 385 nt · Reverse (-)
QUG02_RS22830GCF_030348585#QUG02_RS22830
HKClassic
4 317 360-4 319 219 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001884205#BAU27_RS13510Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1988866
Simplified PFAM architecture for RROC_1988866
PFAM domain coverage: 169 / 212 aa (79.7%)
1 aa212 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[148-203]
- Domain count: 2
- Matched identifier: RROC_1988866
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 148-203 ; GerE 148-203
Cluster members and taxonomy
Representative gene: GCF_001884205#BAU27_RS13510
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348585
AssemblyASM3034858v1 · Contighaploid
Genome composition5 499 162 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key