1 PocR#1
7-75 aa · 69 aa · 11.6% of protein
Raw token
PocR:7:0.000000648:75:102:162P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG02_RS16155
Histidine kinase, Classic
Bacillus hominis · GCF_030348585
ClassHKTypeClassicLength596 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_030348585#QUG02_RS16155Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
PocRPASPAS_4HisKAHATPase_c
Protein length596 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage442 / 596 aa (74.2%)Merged over positioned domains only.
Domain description1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa596 aa
Domain-by-domain annotation5 items
2 PAS#2
131-234 aa · 104 aa · 17.4% of protein
Raw token
PAS:131:0.000000016:234:109:1133 PAS_4#3
255-357 aa · 103 aa · 17.3% of protein
Raw token
PAS_4:255:0.000000000000393:357:108:1104 HisKA#4
372-434 aa · 63 aa · 10.6% of protein
Raw token
HisKA:372:0.000000000000282:434:63:645 HATPase_c#5
479-581 aa · 103 aa · 17.3% of protein
Raw token
HATPase_c:479:3.83e-24:581:107:109- Raw architecture: PocR:7:0.000000648:75:102:162#PAS:131:0.000000016:234:109:113#PAS_4:255:0.000000000000393:357:108:110#HisKA:372:0.000000000000282:434:63:64#HATPase_c:479:3.83e-24:581:107:109
- Domain description: 1 PocR,1 PAS,1 PAS_4,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_030348585::NZ_JAUCFG010000002.1::G00034
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3043840-3047887Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG02_16155RefSeq proteinWP_289359757.1
Context group ID
GCF_030348585::NZ_JAUCFG010000002.1::G00034Context members
QUG02_RS16145QUG02_RS16150QUG02_RS16155
Partner locus tags
QUG02_RS16145QUG02_RS16150QUG02_RS16155
Partner old locus tags
QUG02_16145QUG02_16150QUG02_16155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289359757.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R9J0Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R9J0_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG02_RS16155Primary locus identifier stored in the genes table.
Old locus tagQUG02_16155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFG010000002.1Sequence record reported by the local genomic context database.
Genomic interval3 046 097-3 047 887 nt1 791 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 043 840-3 047 887 ntGCF_030348585::NZ_JAUCFG010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348585::NZ_JAUCFG010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 043 840-3 047 887 nt4 048 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 043 840 nt3 047 887 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QUG02_RS16145GCF_030348585#QUG02_RS16145
HKClassic
3 043 840-3 044 898 nt · Reverse (-)
QUG02_RS16150GCF_030348585#QUG02_RS16150
RROmpR
3 044 895-3 045 608 nt · Reverse (-)
QUG02_RS16155GCF_030348585#QUG02_RS16155
HKClassicCurrent focus
3 046 097-3 047 887 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS18405Use this link to inspect the representative gene detail.
PFAM architecturePAS + PAS_4 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1077680
Simplified PFAM architecture for HKOC_1077680
PFAM domain coverage: 338 / 596 aa (56.7%)
1 aa596 aa
PASPAS_4HisKAHATPase_c
- Simplified architecture: PAS + PAS_4 + HisKA + HATPase_c
- Raw architecture: PAS[131-200] | PAS_4[255-357] | HisKA[373-433] | HATPase_c[479-582]
- Domain count: 4
- Matched identifier: HKOC_1077680
- Positioned domains: PAS 131-200 ; PAS_4 255-357 ; HisKA 373-433 ; HATPase_c 479-582
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS18405
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348585
AssemblyASM3034858v1 · Contighaploid
Genome composition5 499 162 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key