1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:5.48e-40:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG02_RS16150
Response regulator OmpR family
Bacillus hominis · GCF_030348585
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_030348585#QUG02_RS16150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 237 aa (78.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 31.6% of protein
Raw token
Trans_reg_C:155:4.48e-32:229:75:77- Raw architecture: Response_reg:5:5.48e-40:114:111:111#Trans_reg_C:155:4.48e-32:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_030348585::NZ_JAUCFG010000002.1::G00034
Group size33 locus tags listed below.
HK / RR2 / 1Counts resolved for the local TCS neighborhood.
Context span3043840-3047887Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG02_16150RefSeq proteinWP_088059487.1
Context group ID
GCF_030348585::NZ_JAUCFG010000002.1::G00034Context members
QUG02_RS16145QUG02_RS16150QUG02_RS16155
Partner locus tags
QUG02_RS16145QUG02_RS16150QUG02_RS16155
Partner old locus tags
QUG02_16145QUG02_16150QUG02_16155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_088059487.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R9J4Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R9J4_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG02_RS16150Primary locus identifier stored in the genes table.
Old locus tagQUG02_16150Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFG010000002.1Sequence record reported by the local genomic context database.
Genomic interval3 044 895-3 045 608 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 043 840-3 047 887 ntGCF_030348585::NZ_JAUCFG010000002.1::G00034
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348585::NZ_JAUCFG010000002.1::G00034Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span3 043 840-3 047 887 nt4 048 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 043 840 nt3 047 887 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
QUG02_RS16145GCF_030348585#QUG02_RS16145
HKClassic
3 043 840-3 044 898 nt · Reverse (-)
QUG02_RS16150GCF_030348585#QUG02_RS16150
RROmpRCurrent focus
3 044 895-3 045 608 nt · Reverse (-)
QUG02_RS16155GCF_030348585#QUG02_RS16155
HKClassic
3 046 097-3 047 887 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_018332515#KI356_RS21955Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0974355
Simplified PFAM architecture for RROC_0974355
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-229]
- Domain count: 2
- Matched identifier: RROC_0974355
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 155-229
Cluster members and taxonomy
Representative gene: GCF_018332515#KI356_RS21955
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348585
AssemblyASM3034858v1 · Contighaploid
Genome composition5 499 162 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key