1 HAMP#1
165-231 aa · 67 aa · 14.6% of protein
Raw token
HAMP:165:0.00000000000000298:231:67:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG02_RS13705
Histidine kinase, Classic
Bacillus hominis · GCF_030348585
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348585#QUG02_RS13705Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage216 / 458 aa (47.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
244-303 aa · 60 aa · 13.1% of protein
Raw token
HisKA:244:0.00000000000121:303:61:643 HATPase_c#3
349-437 aa · 89 aa · 19.4% of protein
Raw token
HATPase_c:349:7.89e-17:437:91:109- Raw architecture: HAMP:165:0.00000000000000298:231:67:69#HisKA:244:0.00000000000121:303:61:64#HATPase_c:349:7.89e-17:437:91:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348585::NZ_JAUCFG010000002.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2568100-2570116Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG02_13705RefSeq proteinWP_289359412.1
Context group ID
GCF_030348585::NZ_JAUCFG010000002.1::G00030Context members
QUG02_RS13705QUG02_RS13710
Partner locus tags
QUG02_RS13705QUG02_RS13710
Partner old locus tags
QUG02_13705QUG02_13710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289359412.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R9Z7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R9Z7_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG02_RS13705Primary locus identifier stored in the genes table.
Old locus tagQUG02_13705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFG010000002.1Sequence record reported by the local genomic context database.
Genomic interval2 568 100-2 569 476 nt1 377 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 568 100-2 570 116 ntGCF_030348585::NZ_JAUCFG010000002.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348585::NZ_JAUCFG010000002.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFG010000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 568 100-2 570 116 nt2 017 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 568 100 nt2 570 116 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUG02_RS13705GCF_030348585#QUG02_RS13705
HKClassicCurrent focus
2 568 100-2 569 476 nt · Reverse (-)
QUG02_RS13710GCF_030348585#QUG02_RS13710
RROmpR
2 569 469-2 570 116 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348535#QUG28_RS13425Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1868168
Simplified PFAM architecture for HKOC_1868168
PFAM domain coverage: 202 / 458 aa (44.1%)
1 aa458 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[182-231] | HisKA[245-303] | HATPase_c[350-442]
- Domain count: 3
- Matched identifier: HKOC_1868168
- Positioned domains: HAMP 182-231 ; HisKA 245-303 ; HATPase_c 350-442
Cluster members and taxonomy
Representative gene: GCF_030348535#QUG28_RS13425
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348585
AssemblyASM3034858v1 · Contighaploid
Genome composition5 499 162 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key