1 Response_reg#1
4-112 aa · 109 aa · 48.9% of protein
Raw token
Response_reg:4:2.24e-35:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUG28_RS02865
Response regulator OmpR family
Bacillus hominis · GCF_030348535
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348535#QUG28_RS02865Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 223 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
145-220 aa · 76 aa · 34.1% of protein
Raw token
Trans_reg_C:145:2.55e-29:220:77:77- Raw architecture: Response_reg:4:2.24e-35:112:110:111#Trans_reg_C:145:2.55e-29:220:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348535::NZ_JAUCFH010000001.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span549224-551142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUG28_02865RefSeq proteinWP_289358056.1
Context group ID
GCF_030348535::NZ_JAUCFH010000001.1::G00006Context members
QUG28_RS02865QUG28_RS02870
Partner locus tags
QUG28_RS02865QUG28_RS02870
Partner old locus tags
QUG28_02865QUG28_02870
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289358056.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R2M3Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R2M3_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUG28_RS02865Primary locus identifier stored in the genes table.
Old locus tagQUG28_02865Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFH010000001.1Sequence record reported by the local genomic context database.
Genomic interval549 224-549 895 nt672 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span549 224-551 142 ntGCF_030348535::NZ_JAUCFH010000001.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348535::NZ_JAUCFH010000001.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFH010000001.1All displayed genes belong to this local TCS context.
Neighborhood span549 224-551 142 nt1 919 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
549 224 nt551 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUG28_RS02865GCF_030348535#QUG28_RS02865
RROmpRCurrent focus
549 224-549 895 nt · Forward (+)
QUG28_RS02870GCF_030348535#QUG28_RS02870
HKClassic
549 907-551 142 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS05265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1618067
Simplified PFAM architecture for RROC_1618067
PFAM domain coverage: 185 / 223 aa (83.0%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-220]
- Domain count: 2
- Matched identifier: RROC_1618067
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-220
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS05265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348535
AssemblyASM3034853v1 · Contighaploid
Genome composition5 557 385 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 105 · HK 59 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key