1 GAF#1
26-167 aa · 142 aa · 38.2% of protein
Raw token
GAF:26:0.00000000117:167:144:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF93_RS13005
Histidine kinase, Classic
Bacillus hominis · GCF_030348325
ClassHKTypeClassicLength372 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348325#QUF93_RS13005Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
GAFHisKA_3HATPase_c
Protein length372 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage302 / 372 aa (81.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa372 aa
Domain-by-domain annotation3 items
2 HisKA_3#2
184-249 aa · 66 aa · 17.7% of protein
Raw token
HisKA_3:184:1.75e-16:249:68:683 HATPase_c#3
279-372 aa · 94 aa · 25.3% of protein
Raw token
HATPase_c:279:0.0000000000000034:372:109:109- Raw architecture: GAF:26:0.00000000117:167:144:133#HisKA_3:184:1.75e-16:249:68:68#HATPase_c:279:0.0000000000000034:372:109:109
- Domain description: 1 GAF,1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348325::NZ_JAUCFS010000005.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2055689-2057457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF93_13020RefSeq proteinWP_289359043.1
Context group ID
GCF_030348325::NZ_JAUCFS010000005.1::G00023Context members
QUF93_RS13005QUF93_RS13010
Partner locus tags
QUF93_RS13005QUF93_RS13010
Partner old locus tags
QUF93_13020QUF93_13025
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289359043.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R6Q5Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R6Q5_9BACIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF93_RS13005Primary locus identifier stored in the genes table.
Old locus tagQUF93_13020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFS010000005.1Sequence record reported by the local genomic context database.
Genomic interval2 055 689-2 056 807 nt1 119 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 055 689-2 057 457 ntGCF_030348325::NZ_JAUCFS010000005.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348325::NZ_JAUCFS010000005.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span2 055 689-2 057 457 nt1 769 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 055 689 nt2 057 457 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF93_RS13005GCF_030348325#QUF93_RS13005
HKClassicCurrent focus
2 055 689-2 056 807 nt · Forward (+)
QUF93_RS13010GCF_030348325#QUF93_RS13010
RRNarL
2 056 822-2 057 457 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS13005The current gene is the representative for this cluster.
PFAM architectureGAF_2 + HisKA_3 + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2673654
Simplified PFAM architecture for HKOC_2673654
PFAM domain coverage: 297 / 372 aa (79.8%)
1 aa372 aa
GAF_2HisKA_3HATPase_c
- Simplified architecture: GAF_2 + HisKA_3 + HATPase_c
- Raw architecture: GAF_2[24-168] | HisKA_3[184-248] | HATPase_c[285-371]
- Domain count: 3
- Matched identifier: HKOC_2673654
- Positioned domains: GAF_2 24-168 ; HisKA_3 184-248 ; HATPase_c 285-371
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS13005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348325
AssemblyASM3034832v1 · Contigreference genome · haploid
Genome composition5 526 302 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key