1 Response_reg#1
6-114 aa · 109 aa · 46.8% of protein
Raw token
Response_reg:6:3e-33:114:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF93_RS07880
Response regulator OmpR family
Bacillus hominis · GCF_030348325
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348325#QUF93_RS07880Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 233 aa (80.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.5% of protein
Raw token
Trans_reg_C:153:4.67e-34:230:78:77- Raw architecture: Response_reg:6:3e-33:114:110:111#Trans_reg_C:153:4.67e-34:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348325::NZ_JAUCFS010000005.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1086530-1088983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF93_07895RefSeq proteinWP_289358396.1
Context group ID
GCF_030348325::NZ_JAUCFS010000005.1::G00011Context members
QUF93_RS07875QUF93_RS07880
Partner locus tags
QUF93_RS07875QUF93_RS07880
Partner old locus tags
QUF93_07890QUF93_07895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289358396.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R405Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R405_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF93_RS07880Primary locus identifier stored in the genes table.
Old locus tagQUF93_07895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFS010000005.1Sequence record reported by the local genomic context database.
Genomic interval1 088 282-1 088 983 nt702 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 086 530-1 088 983 ntGCF_030348325::NZ_JAUCFS010000005.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348325::NZ_JAUCFS010000005.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span1 086 530-1 088 983 nt2 454 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 086 530 nt1 088 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF93_RS07875GCF_030348325#QUF93_RS07875
HKClassic
1 086 530-1 088 272 nt · Reverse (-)
QUF93_RS07880GCF_030348325#QUF93_RS07880
RROmpRCurrent focus
1 088 282-1 088 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS07880The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1104719
Simplified PFAM architecture for RROC_1104719
PFAM domain coverage: 187 / 233 aa (80.3%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1104719
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS07880
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348325
AssemblyASM3034832v1 · Contigreference genome · haploid
Genome composition5 526 302 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key