1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:3.92e-37:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QUF93_RS04035
Response regulator OmpR family
Bacillus hominis · GCF_030348325
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030348325#QUF93_RS04035Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:155:1.83e-35:230:76:77- Raw architecture: Response_reg:6:3.92e-37:115:111:111#Trans_reg_C:155:1.83e-35:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030348325::NZ_JAUCFS010000005.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span293267-294983Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQUF93_04045RefSeq proteinWP_289357932.1
Context group ID
GCF_030348325::NZ_JAUCFS010000005.1::G00002Context members
QUF93_RS04030QUF93_RS04035
Partner locus tags
QUF93_RS04030QUF93_RS04035
Partner old locus tags
QUF93_04040QUF93_04045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_289357932.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT7R208Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT7R208_9BACIDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQUF93_RS04035Primary locus identifier stored in the genes table.
Old locus tagQUF93_04045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAUCFS010000005.1Sequence record reported by the local genomic context database.
Genomic interval294 270-294 983 nt714 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span293 267-294 983 ntGCF_030348325::NZ_JAUCFS010000005.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030348325::NZ_JAUCFS010000005.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAUCFS010000005.1All displayed genes belong to this local TCS context.
Neighborhood span293 267-294 983 nt1 717 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
293 267 nt294 983 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QUF93_RS04030GCF_030348325#QUF93_RS04030
HKClassic
293 267-294 280 nt · Reverse (-)
QUF93_RS04035GCF_030348325#QUF93_RS04035
RROmpRCurrent focus
294 270-294 983 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030348325#QUF93_RS04035The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0978552
Simplified PFAM architecture for RROC_0978552
PFAM domain coverage: 186 / 237 aa (78.5%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_0978552
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_030348325#QUF93_RS04035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 817 478 · GCF_030348325
AssemblyASM3034832v1 · Contigreference genome · haploid
Genome composition5 526 302 bp · 35,5% GCBacillus hominis
Signal transduction countsGenes 103 · HK 57 · RR 46CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key