1 Response_reg#1
3-110 aa · 108 aa · 45.0% of protein
Raw token
Response_reg:3:1.37e-17:110:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS29280
Response regulator LytTR family
Bacillus mycoides · GCF_030292225
ClassRRTypeLytTRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030292225#QRE62_RS29280Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage200 / 240 aa (83.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 LytTR#2
149-240 aa · 92 aa · 38.3% of protein
Raw token
LytTR:149:8.96e-19:240:97:98- Raw architecture: Response_reg:3:1.37e-17:110:108:111#LytTR:149:8.96e-19:240:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030292225::NZ_CP128149.1::G00060
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span4948685-4949407Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_29275RefSeq proteinWP_113709212.1
Context group ID
GCF_030292225::NZ_CP128149.1::G00060Context members
QRE62_RS29280
Partner locus tags
QRE62_RS29280
Partner old locus tags
QRE62_29275
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_113709212.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS29280Primary locus identifier stored in the genes table.
Old locus tagQRE62_29275Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128149.1Sequence record reported by the local genomic context database.
Genomic interval4 948 685-4 949 407 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 948 685-4 949 407 ntGCF_030292225::NZ_CP128149.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128149.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128149.1All displayed genes belong to this local TCS context.
Neighborhood span4 948 685-4 949 407 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 948 685 nt4 949 407 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QRE62_RS29280GCF_030292225#QRE62_RS29280
RRLytTRCurrent focus
4 948 685-4 949 407 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003264205#B5P40_RS09975Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0887995
Simplified PFAM architecture for RROC_0887995
PFAM domain coverage: 203 / 240 aa (84.6%)
1 aa240 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-116] | LytTR[150-238]
- Domain count: 2
- Matched identifier: RROC_0887995
- Positioned domains: Response_reg 3-116 ; Response_reg 3-116 ; LytTR 150-238 ; LytTR 150-238
Cluster members and taxonomy
Representative gene: GCF_003264205#B5P40_RS09975
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key