1 Response_reg#1
6-117 aa · 112 aa · 55.4% of protein
Raw token
Response_reg:6:7.99e-22:117:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS19960
Response regulator NarL family
Bacillus mycoides · GCF_030292225
ClassRRTypeNarLLength202 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_030292225#QRE62_RS19960Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length202 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 202 aa (83.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa202 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
137-192 aa · 56 aa · 27.7% of protein
Raw token
HTH_LUXR:137:2.55e-16:192:56:58- Raw architecture: Response_reg:6:7.99e-22:117:112:111#HTH_LUXR:137:2.55e-16:192:56:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_030292225::NZ_CP128149.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3189211-3189819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_19950RefSeq proteinWP_286126038.1
Context group ID
GCF_030292225::NZ_CP128149.1::G00043Context members
QRE62_RS19960
Partner locus tags
QRE62_RS19960
Partner old locus tags
QRE62_19950
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286126038.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS19960Primary locus identifier stored in the genes table.
Old locus tagQRE62_19950Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128149.1Sequence record reported by the local genomic context database.
Genomic interval3 189 211-3 189 819 nt609 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 189 211-3 189 819 ntGCF_030292225::NZ_CP128149.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128149.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128149.1All displayed genes belong to this local TCS context.
Neighborhood span3 189 211-3 189 819 nt609 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 189 211 nt3 189 819 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QRE62_RS19960GCF_030292225#QRE62_RS19960
RRNarLCurrent focus
3 189 211-3 189 819 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030292225#QRE62_RS19960The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2119034
Simplified PFAM architecture for RROC_2119034
PFAM domain coverage: 165 / 202 aa (81.7%)
1 aa202 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[138-191]
- Domain count: 2
- Matched identifier: RROC_2119034
- Positioned domains: Response_reg 6-116 ; GerE 138-191
Cluster members and taxonomy
Representative gene: GCF_030292225#QRE62_RS19960
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key