1 Hpt#1
4-96 aa · 93 aa · 14.0% of protein
Raw token
Hpt:4:8.93e-17:96:93:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS12340
Histidine kinase, CheA
Bacillus mycoides · GCF_030292225
ClassHKTypeCheALength662 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292225#QRE62_RS12340Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length662 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage426 / 662 aa (64.4%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa662 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
279-338 aa · 60 aa · 9.1% of protein
Raw token
H-kinase_dim:279:0.00000000803:338:67:673 HATPase_c#3
386-525 aa · 140 aa · 21.1% of protein
Raw token
HATPase_c:386:8.79e-18:525:140:1094 CheW#4
530-662 aa · 133 aa · 20.1% of protein
Raw token
CheW:530:1.46e-21:662:139:138- Raw architecture: Hpt:4:8.93e-17:96:93:84#H-kinase_dim:279:0.00000000803:338:67:67#HATPase_c:386:8.79e-18:525:140:109#CheW:530:1.46e-21:662:139:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292225::NZ_CP128149.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1673780-1676265Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_12330RefSeq proteinWP_286126569.1
Context group ID
GCF_030292225::NZ_CP128149.1::G00022Context members
QRE62_RS12335QRE62_RS12340
Partner locus tags
QRE62_RS12335QRE62_RS12340
Partner old locus tags
QRE62_12325QRE62_12330
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286126569.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS12340Primary locus identifier stored in the genes table.
Old locus tagQRE62_12330Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128149.1Sequence record reported by the local genomic context database.
Genomic interval1 674 277-1 676 265 nt1 989 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 673 780-1 676 265 ntGCF_030292225::NZ_CP128149.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128149.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128149.1All displayed genes belong to this local TCS context.
Neighborhood span1 673 780-1 676 265 nt2 486 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 673 780 nt1 676 265 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRE62_RS12335GCF_030292225#QRE62_RS12335
RRCheY
1 673 780-1 674 148 nt · Forward (+)
QRE62_RS12340GCF_030292225#QRE62_RS12340
HKCheACurrent focus
1 674 277-1 676 265 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030292225#QRE62_RS12340The current gene is the representative for this cluster.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0868900
Simplified PFAM architecture for HKOC_0868900
PFAM domain coverage: 509 / 662 aa (76.9%)
1 aa662 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-103] | P2[148-225] | H-kinase_dim[279-337] | HATPase_c[386-525] | CheW[531-662]
- Domain count: 5
- Matched identifier: HKOC_0868900
- Positioned domains: Hpt 4-103 ; P2 148-225 ; H-kinase_dim 279-337 ; HATPase_c 386-525 ; CheW 531-662
Cluster members and taxonomy
Representative gene: GCF_030292225#QRE62_RS12340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key