1 HAMP#1
192-259 aa · 68 aa · 14.0% of protein
Raw token
HAMP:192:0.000000000093:259:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS06750
Histidine kinase, Classic
Bacillus mycoides · GCF_030292225
ClassHKTypeClassicLength487 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292225#QRE62_RS06750Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length487 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 487 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa487 aa
Domain-by-domain annotation3 items
2 HisKA#2
265-330 aa · 66 aa · 13.6% of protein
Raw token
HisKA:265:0.0000000000000702:330:66:643 HATPase_c#3
377-486 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:377:1.68e-32:486:110:109- Raw architecture: HAMP:192:0.000000000093:259:70:69#HisKA:265:0.0000000000000702:330:66:64#HATPase_c:377:1.68e-32:486:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292225::NZ_CP128149.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span605300-607512Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_06740RefSeq proteinWP_286126437.1
Context group ID
GCF_030292225::NZ_CP128149.1::G00008Context members
QRE62_RS06750QRE62_RS06755
Partner locus tags
QRE62_RS06750QRE62_RS06755
Partner old locus tags
QRE62_06740QRE62_06745
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_286126437.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS06750Primary locus identifier stored in the genes table.
Old locus tagQRE62_06740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128149.1Sequence record reported by the local genomic context database.
Genomic interval605 300-606 763 nt1 464 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span605 300-607 512 ntGCF_030292225::NZ_CP128149.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128149.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128149.1All displayed genes belong to this local TCS context.
Neighborhood span605 300-607 512 nt2 213 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
605 300 nt607 512 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRE62_RS06750GCF_030292225#QRE62_RS06750
HKClassicCurrent focus
605 300-606 763 nt · Reverse (-)
QRE62_RS06755GCF_030292225#QRE62_RS06755
RROmpR
606 841-607 512 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_030292225#QRE62_RS06750The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1564022
Simplified PFAM architecture for HKOC_1564022
PFAM domain coverage: 225 / 487 aa (46.2%)
1 aa487 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[210-259] | HisKA[266-330] | HATPase_c[377-486]
- Domain count: 3
- Matched identifier: HKOC_1564022
- Positioned domains: HAMP 210-259 ; HisKA 266-330 ; HATPase_c 377-486
Cluster members and taxonomy
Representative gene: GCF_030292225#QRE62_RS06750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key