1 HAMP#1
92-162 aa · 71 aa · 18.2% of protein
Raw token
HAMP:92:0.000000000115:162:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE62_RS01170
Histidine kinase, Classic
Bacillus mycoides · GCF_030292225
ClassHKTypeClassicLength391 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292225#QRE62_RS01170Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length391 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage248 / 391 aa (63.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa391 aa
Domain-by-domain annotation3 items
2 HisKA#2
166-232 aa · 67 aa · 17.1% of protein
Raw token
HisKA:166:0.0000000000034:232:67:643 HATPase_c#3
274-383 aa · 110 aa · 28.1% of protein
Raw token
HATPase_c:274:4.19e-30:383:110:109- Raw architecture: HAMP:92:0.000000000115:162:71:69#HisKA:166:0.0000000000034:232:67:64#HATPase_c:274:4.19e-30:383:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292225::NZ_CP128143.1::G00071
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span244021-245878Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE62_01165RefSeq proteinWP_181462977.1
Context group ID
GCF_030292225::NZ_CP128143.1::G00071Context members
QRE62_RS01165QRE62_RS01170
Partner locus tags
QRE62_RS01165QRE62_RS01170
Partner old locus tags
QRE62_01160QRE62_01165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_181462977.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE62_RS01170Primary locus identifier stored in the genes table.
Old locus tagQRE62_01165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128143.1Sequence record reported by the local genomic context database.
Genomic interval244 703-245 878 nt1 176 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span244 021-245 878 ntGCF_030292225::NZ_CP128143.1::G00071
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292225::NZ_CP128143.1::G00071Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128143.1All displayed genes belong to this local TCS context.
Neighborhood span244 021-245 878 nt1 858 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
244 021 nt245 878 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRE62_RS01165GCF_030292225#QRE62_RS01165
RROmpR
244 021-244 710 nt · Forward (+)
QRE62_RS01170GCF_030292225#QRE62_RS01170
HKClassicCurrent focus
244 703-245 878 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014535#BW900_RS28740Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2512376
Simplified PFAM architecture for HKOC_2512376
PFAM domain coverage: 228 / 392 aa (58.2%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[111-162] | HisKA[168-233] | HATPase_c[276-385]
- Domain count: 3
- Matched identifier: HKOC_2512376
- Positioned domains: HAMP 111-162 ; HisKA 168-233 ; HATPase_c 276-385
Cluster members and taxonomy
Representative gene: GCF_002014535#BW900_RS28740
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292225
AssemblyASM3029222v1 · Complete Genomehaploid
Genome composition6 138 997 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 122 · HK 66 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key