1 Response_reg#1
4-113 aa · 110 aa · 49.8% of protein
Raw token
Response_reg:4:1.43e-31:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRE64_RS25150
Response regulator OmpR family
Bacillus mycoides · GCF_030292115
ClassRRTypeOmpRLength221 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292115#QRE64_RS25150Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length221 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 221 aa (82.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa221 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-219 aa · 72 aa · 32.6% of protein
Raw token
Trans_reg_C:148:6.53e-31:219:77:77- Raw architecture: Response_reg:4:1.43e-31:113:111:111#Trans_reg_C:148:6.53e-31:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292115::NZ_CP128137.1::G00059
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4840231-4842301Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRE64_25095RefSeq proteinWP_002191116.1
Context group ID
GCF_030292115::NZ_CP128137.1::G00059Context members
QRE64_RS25150QRE64_RS25155
Partner locus tags
QRE64_RS25150QRE64_RS25155
Partner old locus tags
QRE64_25095QRE64_25100
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002191116.1Primary protein accession used for annex mappings.
UniProt accessionA0A1S9TBG1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1S9TBG1_BACMYDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRE64_RS25150Primary locus identifier stored in the genes table.
Old locus tagQRE64_25095Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128137.1Sequence record reported by the local genomic context database.
Genomic interval4 840 231-4 840 896 nt666 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 840 231-4 842 301 ntGCF_030292115::NZ_CP128137.1::G00059
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292115::NZ_CP128137.1::G00059Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128137.1All displayed genes belong to this local TCS context.
Neighborhood span4 840 231-4 842 301 nt2 071 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 840 231 nt4 842 301 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRE64_RS25150GCF_030292115#QRE64_RS25150
RROmpRCurrent focus
4 840 231-4 840 896 nt · Forward (+)
QRE64_RS25155GCF_030292115#QRE64_RS25155
HKClassic
4 840 874-4 842 301 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_002014535#BW900_RS09080Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1684358
Simplified PFAM architecture for RROC_1684358
PFAM domain coverage: 180 / 221 aa (81.4%)
1 aa221 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[148-218]
- Domain count: 2
- Matched identifier: RROC_1684358
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 148-218 ; Trans_reg_C 148-218
Cluster members and taxonomy
Representative gene: GCF_002014535#BW900_RS09080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292115
AssemblyASM3029211v1 · Complete Genomehaploid
Genome composition6 137 878 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 123 · HK 67 · RR 56CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key