1 Response_reg#1
4-113 aa · 110 aa · 49.1% of protein
Raw token
Response_reg:4:2.23e-33:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QRX95_RS13300
Response regulator OmpR family
Bacillus mycoides · GCF_030292015
ClassRRTypeOmpRLength224 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_030292015#QRX95_RS13300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length224 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 224 aa (83.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa224 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-223 aa · 76 aa · 33.9% of protein
Raw token
Trans_reg_C:148:9.14e-31:223:77:77- Raw architecture: Response_reg:4:2.23e-33:113:111:111#Trans_reg_C:148:9.14e-31:223:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_030292015::NZ_CP128112.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2593319-2595408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQRX95_13300RefSeq proteinWP_002013178.1
Context group ID
GCF_030292015::NZ_CP128112.1::G00036Context members
QRX95_RS13295QRX95_RS13300
Partner locus tags
QRX95_RS13295QRX95_RS13300
Partner old locus tags
QRX95_13295QRX95_13300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002013178.1Primary protein accession used for annex mappings.
UniProt accessionJ8HKF5Primary UniProt accession resolved in the annex database.
UniProt IDJ8HKF5_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQRX95_RS13300Primary locus identifier stored in the genes table.
Old locus tagQRX95_13300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_CP128112.1Sequence record reported by the local genomic context database.
Genomic interval2 594 734-2 595 408 nt675 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 593 319-2 595 408 ntGCF_030292015::NZ_CP128112.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_030292015::NZ_CP128112.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_CP128112.1All displayed genes belong to this local TCS context.
Neighborhood span2 593 319-2 595 408 nt2 090 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 593 319 nt2 595 408 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QRX95_RS13295GCF_030292015#QRX95_RS13295
HKClassic
2 593 319-2 594 737 nt · Reverse (-)
QRX95_RS13300GCF_030292015#QRX95_RS13300
RROmpRCurrent focus
2 594 734-2 595 408 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000160975#BCERE0007_RS12210Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1529220
Simplified PFAM architecture for RROC_1529220
PFAM domain coverage: 183 / 224 aa (81.7%)
1 aa224 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[149-222]
- Domain count: 2
- Matched identifier: RROC_1529220
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 149-222 ; Trans_reg_C 149-222
Cluster members and taxonomy
Representative gene: GCF_000160975#BCERE0007_RS12210
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_030292015
AssemblyASM3029201v1 · Complete Genomehaploid
Genome composition5 338 331 bp · 35,5% GCBacillus mycoides
Signal transduction countsGenes 125 · HK 67 · RR 58CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key